Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001263.1 Corchorus olitorius cultivar O-4 contig01263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 740

Length: 1234
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33


Found at i:1085 original size:42 final size:44

Alignment explanation


    Indices: 1034--1127  Score: 131
    Period size: 45  Copynumber: 2.2  Consensus size: 44

       1024 AGTGCATTAT

                                     *                  
       1034 CTAA-ATTCTACTC-T-ATCTCTAGGTAAATCATCAAAATAAAG
          1 CTAATATTCTACTCTTCATCTCTAGATAAATCATCAAAATAAAG

              *                           *              
       1075 CTGATATTCTACTCTTCCATCTCTAGATAATTCATCAAAATAAAG
          1 CTAATATTCTACTCTT-CATCTCTAGATAAATCATCAAAATAAAG

                    
       1120 CTAATATT
          1 CTAATATT

       1128 AATTTTTGCT


Statistics
Matches: 45,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
  41    3  0.07
  42    9  0.20
  43    1  0.02
  45   32  0.71

ACGTcount: A:0.38, C:0.20, G:0.06, T:0.35


Consensus pattern (44 bp):   
CTAATATTCTACTCTTCATCTCTAGATAAATCATCAAAATAAAG
Done.