Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012640.1 Corchorus olitorius cultivar O-4 contig12673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70949

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15987--16014
3
9.3
3
100
0
56
0
32
0
67
0.91
17056--17103
15
3.5
15
73
26
61
33
18
22
25
1.97
19336--19380
6
7.2
6
90
9
72
0
20
0
80
0.72
24076--24139
29
2.1
31
82
5
78
25
17
14
43
1.86
25699--25804
27
4.2
27
70
26
81
28
7
0
63
1.28
25688--25806
19
6.3
19
70
20
65
27
8
0
63
1.29
25688--25900
8
27.6
8
65
24
61
24
12
0
61
1.37
25700--25806
46
2.3
46
95
0
187
28
7
0
63
1.27
25830--25896
24
2.8
24
80
8
82
22
19
1
56
1.50
25896--25954
3
20.3
3
93
6
104
30
0
0
69
0.89
39852--40541
54
12.8
53
80
7
606
27
17
22
31
1.97
40506--40740
113
2.1
113
98
0
452
31
16
22
28
1.96
42076--42180
4
27.0
4
67
16
51
29
6
0
62
1.27
42076--42183
15
7.0
15
65
24
55
29
6
0
62
1.26
42086--42151
27
2.4
27
82
12
73
30
6
0
63
1.18
42075--42180
7
14.6
8
70
23
51
29
7
0
62
1.29
42097--42187
36
2.6
35
86
6
132
30
6
1
61
1.28
42162--42225
21
3.0
21
75
6
67
21
10
0
67
1.21
45293--45373
40
2.0
40
90
0
126
20
23
20
34
1.97
45649--45692
11
4.0
11
82
8
54
20
11
18
50
1.77
50424--50460
18
1.9
18
89
10
56
16
8
0
75
1.02
52904--52954
17
3.1
16
86
8
66
35
21
21
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55295--55326
3
10.7
3
93
0
55
65
0
34
0
0.93
55367--55418
20
2.5
21
81
12
63
11
5
5
76
1.13
55511--55585
30
2.5
31
77
2
80
33
20
16
30
1.94
60489--60574
45
1.9
45
92
0
145
39
27
13
18
1.89
60489--60590
45
2.3
45
87
3
143
39
28
14
17
1.89
65926--65973
25
1.9
25
87
8
71
41
10
12
35
1.77
66068--66139
30
2.4
30
92
0
117
48
1
8
41
1.42
66051--66216
13
11.5
14
65
26
64
49
0
8
41
1.37
66163--66227
23
2.9
22
76
15
78
52
0
6
41
1.26
66446--66576
62
2.1
62
90
4
203
32
19
6
41
1.76
66825--66870
18
2.6
18
78
0
56
45
0
2
52
1.13
70648--70693
18
2.6
18
78
0
56
45
0
2
52
1.13

Tables:   1

The End!