Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012641.1 Corchorus olitorius cultivar O-4 contig12674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34488

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7769--7810
22
2.0
22
86
13
61
28
14
11
45
1.80
9383--9458
25
2.8
27
75
16
77
68
1
22
7
1.23
9630--9715
42
2.0
42
82
4
102
33
11
12
41
1.80
10827--10963
54
2.6
53
84
4
143
24
15
22
37
1.92
10947--11066
55
2.2
55
82
8
147
25
15
23
35
1.94
11040--11302
35
7.5
35
84
5
336
28
13
19
38
1.89
11280--11321
19
2.1
21
91
8
70
33
4
21
40
1.74
11210--11379
91
1.9
91
89
0
268
28
10
19
41
1.84
11301--11909
35
17.4
35
89
1
871
28
13
19
39
1.89
13440--13540
11
9.2
11
71
16
50
25
7
0
65
1.26
13440--13542
19
5.4
18
81
12
107
26
7
0
65
1.26
13440--13553
4
29.5
4
72
11
78
25
7
1
65
1.27
16581--16662
34
2.4
34
97
2
157
8
31
36
23
1.85
16643--16684
21
2.0
22
95
4
77
4
26
38
30
1.77
26235--26279
7
6.0
7
82
14
54
6
15
0
77
0.96
26227--26271
16
2.8
15
80
12
54
6
13
0
80
0.91
26235--26279
16
3.0
14
79
17
54
6
15
0
77
0.96

Tables:   1

The End!