Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012642.1 Corchorus olitorius cultivar O-4 contig12675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23130

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
994--1035
14
3.0
14
92
0
66
73
0
26
0
0.83
5078--5263
37
4.6
38
74
20
139
43
15
13
27
1.84
5157--5275
37
3.2
37
83
8
154
38
15
16
29
1.89
5921--5979
25
2.4
25
82
5
75
55
23
8
11
1.63
7097--7122
1
26.0
1
100
0
52
0
0
0
100
0.00
8839--8943
32
3.0
33
84
15
140
54
3
24
17
1.59
8889--8951
21
3.1
21
60
17
51
50
6
28
14
1.67
8871--8951
40
2.0
40
100
0
162
53
4
27
14
1.62
9208--9534
35
9.2
35
78
5
305
38
23
20
17
1.93
9184--9534
72
4.9
70
79
5
332
38
23
20
17
1.93
9194--9534
107
3.2
106
93
2
558
38
24
20
17
1.93
14508--14553
23
2.0
23
100
0
92
39
13
39
8
1.75
14996--15033
19
2.0
19
100
0
76
31
10
26
31
1.90
15071--15256
55
3.4
55
96
2
333
38
13
19
27
1.90
15224--15295
37
1.9
38
91
2
119
41
16
13
27
1.87
16589--16619
14
2.2
14
94
0
53
35
25
0
38
1.56
21990--22180
38
5.0
37
79
13
190
40
16
14
27
1.88
22054--22180
37
3.5
37
86
7
161
40
17
15
26
1.90
22826--22884
25
2.4
25
80
11
68
54
22
8
15
1.68

Tables:   1

The End!