Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012643.1 Corchorus olitorius cultivar O-4 contig12676, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4980
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31


Found at i:3898 original size:26 final size:24

Alignment explanation


    Indices: 3868--3915  Score: 78
    Period size: 26  Copynumber: 1.9  Consensus size: 24

       3858 CTTGAAAATT

                                      
       3868 TGAAAAACTTTGATGGATGAGATGGA
          1 TGAAAAACTTTGAT-GAT-AGATGGA

                                  
       3894 TGAAAAACTTTGATGATAGATG
          1 TGAAAAACTTTGATGATAGATG

       3916 AATAGAAGGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  24    5  0.23
  25    3  0.14
  26   14  0.64

ACGTcount: A:0.40, C:0.04, G:0.27, T:0.29


Consensus pattern (24 bp):   
TGAAAAACTTTGATGATAGATGGA
Done.