Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012647.1 Corchorus olitorius cultivar O-4 contig12680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44356

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6873--7011
60
2.3
59
88
2
206
27
18
17
36
1.93
20086--20131
21
2.2
21
84
7
58
15
34
4
45
1.66
27509--27618
54
2.0
55
91
5
179
38
1
20
39
1.64
30870--30979
58
1.9
58
88
3
168
33
14
18
33
1.91
32250--32319
36
1.9
36
91
0
113
21
10
8
60
1.55
32832--33241
202
2.0
203
92
4
695
44
8
10
36
1.69
33311--33357
25
1.9
24
86
4
67
51
10
8
29
1.66
34754--34793
21
2.0
20
95
5
71
27
5
7
60
1.45
38211--38251
10
4.0
10
83
3
55
75
0
24
0
0.80
42265--42307
21
2.0
21
100
0
86
23
9
39
27
1.85

Tables:   1

The End!