Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012653.1 Corchorus olitorius cultivar O-4 contig12686, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76036

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--64
2
28.0
2
85
7
69
46
3
0
50
1.19
9--85
36
2.1
36
82
0
91
44
6
2
46
1.43
3083--3108
2
13.0
2
100
0
52
50
0
0
50
1.00
4211--4247
19
1.9
19
94
0
65
29
24
13
32
1.93
7889--7927
18
2.2
18
85
0
51
5
41
0
53
1.23
16027--16056
2
15.0
2
100
0
60
50
0
0
50
1.00
17124--17180
27
2.1
27
100
0
114
28
24
14
33
1.94
20919--20960
18
2.3
18
100
0
84
4
42
33
19
1.72
21125--21176
27
2.0
25
81
7
59
55
5
30
7
1.52
34869--34926
30
1.9
30
92
0
98
46
3
24
25
1.68
35408--35456
22
2.1
24
85
14
68
44
4
0
51
1.20
45420--45467
23
2.1
23
92
0
78
35
16
27
20
1.94
48736--48912
93
1.9
93
90
0
282
33
12
16
36
1.87
49631--49732
51
2.0
51
100
0
204
37
3
9
49
1.55
54640--54669
3
10.0
3
100
0
60
66
0
0
33
0.92
55044--55101
29
2.1
28
87
6
82
48
13
5
32
1.65
55044--55113
29
2.4
29
83
11
81
47
14
5
32
1.68
60128--60155
2
14.0
2
100
0
56
50
0
0
50
1.00
63773--63811
2
19.5
2
100
0
78
48
0
0
51
1.00
66571--66607
4
9.5
4
94
5
67
48
0
0
51
1.00
66571--66608
15
2.5
15
95
4
67
47
0
0
52
1.00
71923--71955
3
11.0
3
100
0
66
0
33
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71923--71985
12
5.0
12
81
11
63
6
38
0
55
1.25

Tables:   1

The End!