genome.fa.s12658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012658.1 Corchorus olitorius cultivar O-4 contig12691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90455

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--41	2	18.0	2	100	0	72	0	50	0	50	1.00
418--442	1	25.0	1	100	0	50	100	0	0	0	0.00
6390--6416	5	5.4	5	100	0	54	22	0	0	77	0.76
9676--9727	24	2.2	24	100	0	104	40	3	15	40	1.65
10882--10942	28	2.1	29	84	6	79	26	16	18	39	1.91
17887--17934	22	2.1	23	84	7	62	33	39	6	20	1.78
24527--24597	33	2.2	33	82	5	81	22	32	21	23	1.98
28505--28531	2	13.5	2	100	0	54	51	0	0	48	1.00
36170--36216	2	23.5	2	100	0	94	51	0	0	48	1.00
38871--38943	36	2.0	36	86	0	101	41	17	17	23	1.90
38975--39132	59	2.7	59	82	3	192	27	17	17	37	1.92
61221--61278	19	2.9	19	78	9	71	39	12	20	27	1.88
70853--70881	2	14.5	2	100	0	58	51	0	0	48	1.00
74886--74950	33	2.0	31	82	11	78	36	9	7	46	1.65
89008--89218	51	4.1	51	87	1	271	37	15	18	28	1.92
89183--89476	38	7.6	38	70	16	151	38	19	18	24	1.93
89549--89804	38	6.4	39	82	8	275	40	20	16	22	1.91
89549--89804	80	3.2	77	81	9	282	40	20	16	22	1.91
89814--89973	41	4.0	41	82	8	211	38	20	16	24	1.92
89637--90075	179	2.5	180	89	3	680	42	19	15	22	1.89
89813--89979	38	4.2	39	79	11	196	40	19	16	23	1.91
90053--90178	32	3.7	33	70	18	105	41	18	12	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90009--90172	69	2.3	70	94	4	294	38	18	15	27	1.91
90149--90386	42	5.6	44	82	7	242	42	18	14	24	1.88
90149--90351	87	2.4	85	84	2	255	43	18	13	24	1.86
90352--90424	38	1.9	38	83	5	94	31	21	21	24	1.98

Tables:   1

The End!