genome.fa.s12659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012659.1 Corchorus olitorius cultivar O-4 contig12692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62722

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17--5406	334	16.2	332	84	3	6377	32	14	15	37	1.88
5403--5869	50	9.1	53	89	3	672	34	28	31	6	1.83
5403--5869	103	4.5	105	88	4	668	34	28	31	6	1.83
5847--5930	31	2.8	30	77	8	91	47	25	21	5	1.73
7852--7916	31	2.1	31	100	0	130	75	6	9	9	1.19
10111--10150	20	2.0	20	95	4	73	20	20	5	55	1.62
17435--17460	11	2.4	11	100	0	52	69	0	7	23	1.14
20000--20074	35	2.1	35	95	0	132	21	14	17	46	1.83
20116--20147	16	2.0	16	93	0	55	53	0	0	46	1.00
20100--20152	19	2.8	19	82	8	63	50	0	0	49	1.00
20124--20173	25	1.9	27	88	8	77	54	4	0	42	1.19
20270--20304	18	1.9	18	94	0	61	28	8	11	51	1.67
24185--24222	19	2.0	19	100	0	76	36	15	10	36	1.82
25290--25336	22	2.3	19	77	19	58	42	17	0	40	1.49
25295--25336	22	1.9	22	95	0	75	40	16	0	42	1.48
31348--31404	21	2.9	19	84	5	69	35	21	8	35	1.84
31370--31406	19	1.9	19	94	0	65	29	18	13	37	1.90
36534--36603	25	2.6	27	88	11	117	31	12	10	45	1.75
45411--45537	60	2.1	60	83	0	155	36	14	15	33	1.89
45442--45542	29	3.4	28	71	10	76	32	15	18	32	1.93
45427--45542	60	1.9	60	89	0	178	31	16	18	32	1.94
45600--45733	60	2.2	59	85	6	189	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45625--45759	60	2.2	60	85	5	175	30	19	15	34	1.93
50297--50323	6	4.5	6	100	0	54	51	14	0	33	1.43
50862--50888	7	3.9	7	100	0	54	59	11	0	29	1.32
53392--53453	31	2.0	31	100	0	124	29	12	16	41	1.85
55826--55857	13	2.5	13	94	0	55	31	6	50	12	1.65
61022--61080	18	3.1	18	71	17	55	52	10	11	25	1.69
61837--61873	19	1.9	19	94	0	65	29	18	13	37	1.90

Tables:   1

The End!