genome.fa.s12661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012661.1 Corchorus olitorius cultivar O-4 contig12694, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110858

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13646--13678	2	16.5	2	100	0	66	51	48	0	0	1.00
32223--32314	30	3.1	29	79	6	103	40	31	15	13	1.85
50434--50461	3	9.3	3	100	0	56	35	32	32	0	1.58
54394--54443	17	2.9	16	80	11	55	24	22	18	36	1.95
54401--54451	17	3.1	16	80	8	57	23	21	19	35	1.96
56118--56149	16	2.0	16	93	0	55	34	18	15	31	1.93
56574--56647	36	2.1	36	87	5	105	25	27	22	24	2.00
64992--65019	2	14.0	2	100	0	56	0	50	0	50	1.00
70777--70925	36	4.2	36	87	8	218	24	21	22	31	1.98
70777--70925	69	2.1	72	90	8	236	24	21	22	31	1.98
74576--74604	14	2.1	14	100	0	58	58	0	6	34	1.25
75816--75871	28	2.0	28	96	0	103	25	16	21	37	1.93
86547--86608	31	2.0	32	87	3	90	33	25	25	14	1.94
106006--106081	40	1.9	40	91	0	125	52	6	22	18	1.68
106060--106564	42	12.3	42	73	15	380	43	17	14	24	1.86
106062--106256	79	2.4	79	81	12	238	43	19	14	22	1.88
106062--106777	265	2.8	253	82	9	834	43	17	15	24	1.87
106575--106795	42	5.3	42	85	3	302	41	15	17	25	1.89
106474--106668	104	1.9	99	88	7	293	46	14	15	24	1.83
106437--106710	146	1.9	138	85	7	370	45	14	15	24	1.84
106916--110858	335	11.8	330	78	6	3817	33	14	14	36	1.88
106959--110853	333	11.7	333	77	6	3792	33	14	14	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106913--110858	668	5.9	665	90	2	5927	33	14	14	36	1.88

Tables:   1

The End!