Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012662.1 Corchorus olitorius cultivar O-4 contig12695, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91398

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--2583
331
7.8
329
81
5
2905
33
16
14
35
1.88
2--2589
664
3.9
664
92
2
4384
33
15
14
36
1.88
2652--3940
332
3.9
329
81
6
1435
34
15
14
35
1.88
4053--4134
40
2.1
40
90
2
130
29
17
25
28
1.97
6325--6668
62
5.5
62
97
0
607
36
22
37
3
1.71
6640--6753
34
3.6
34
75
22
140
48
18
29
3
1.65
6665--6721
24
2.4
24
100
0
114
47
19
29
3
1.66
6640--6753
58
2.0
58
96
0
210
48
18
29
3
1.65
6852--6886
2
17.5
2
100
0
70
51
48
0
0
1.00
7619--7726
45
2.4
45
87
1
137
36
16
25
22
1.94
7642--7742
45
2.2
45
96
0
184
29
21
23
24
1.99
12990--13038
25
2.0
25
95
0
89
34
18
32
14
1.91
13555--17923
333
13.1
333
79
8
4062
34
14
14
36
1.87
13572--17921
667
6.5
665
84
5
4941
34
14
14
36
1.87
53780--53838
18
3.3
18
68
13
59
35
6
3
54
1.44
53770--53842
35
2.1
36
97
2
139
34
8
2
54
1.44
72319--72358
20
2.1
19
90
4
62
37
0
10
52
1.35
80772--80800
12
2.3
13
94
5
51
62
0
6
31
1.22
82133--82174
18
2.3
18
95
0
75
26
14
30
28
1.95
87204--87241
19
2.0
19
100
0
76
31
21
10
36
1.87

Tables:   1

The End!