Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012664.1 Corchorus olitorius cultivar O-4 contig12697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59861
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:11781 original size:11 final size:11
Alignment explanation
Indices: 11765--11795 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
11755 GGAATGTGAG
11765 TTTGTTTGTAA
1 TTTGTTTGTAA
11776 TTTGTTTGTAA
1 TTTGTTTGTAA
11787 TTTGTTTGT
1 TTTGTTTGT
11796 TTATTTGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.13, C:0.00, G:0.19, T:0.68
Consensus pattern (11 bp):
TTTGTTTGTAA
Found at i:19165 original size:2 final size:2
Alignment explanation
Indices: 19153--19184 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
19143 TATGACATCA
*
19153 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19185 GGGGTTAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23968 original size:72 final size:72
Alignment explanation
Indices: 23851--23986 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
23841 CTTTCCGTTC
* * * * *
23851 TCTCAATTCATTTGTGTAAGAAAACATGGATGATATTCTATTTCTTCTAAGCAACTATTGATATT
1 TCTCAATTCATTTGTATAAAAAAACATGGATAATATTCTATTTCTTCCAAGCAACAATTGATATT
23916 ATTCTAA
66 ATTCTAA
*
23923 TCTCAATTCATTTGTATAAAAAAACATGGATAATATTCTATTTCTTCCAAGCAACAATTTATAT
1 TCTCAATTCATTTGTATAAAAAAACATGGATAATATTCTATTTCTTCCAAGCAACAATTGATAT
23987 CATTTCAAGC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 58 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (72 bp):
TCTCAATTCATTTGTATAAAAAAACATGGATAATATTCTATTTCTTCCAAGCAACAATTGATATT
ATTCTAA
Found at i:37341 original size:15 final size:15
Alignment explanation
Indices: 37321--37350 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37311 AACGGTGGAC
37321 GTTGCTTCTCTCTCT
1 GTTGCTTCTCTCTCT
37336 GTTGCTTCTCTCTCT
1 GTTGCTTCTCTCTCT
37351 CCGACTCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.33, G:0.13, T:0.53
Consensus pattern (15 bp):
GTTGCTTCTCTCTCT
Found at i:40255 original size:71 final size:72
Alignment explanation
Indices: 40133--40277 Score: 222
Period size: 71 Copynumber: 2.0 Consensus size: 72
40123 GACATGGTAC
40133 TCATTAAGTCATTTGAATTTTGAGAGAAATTGGTTTGTAGAAAAGTCATTCAAATGAAGATTG-A
1 TCATTAAGTCATTTGAATTTTGAGAGAAATTGGTTTGTAGAAAAGTCATTCAAATGAAGATTGAA
40197 TTCTCTT
66 TTCTCTT
* * * *
40204 TCATTAAGTTATTTGAA-TTTGAGAGAGATTGGTTTGTAGAAAAATTTATTCAAATGAAGATTGA
1 TCATTAAGTCATTTGAATTTTGAGAGAAATTGGTTTGTAG-AAAAGTCATTCAAATGAAGATTGA
40268 TATTCTCTT
65 -ATTCTCTT
40277 T
1 T
40278 GTTTTATGGG
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
70 21 0.31
71 37 0.55
73 9 0.13
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (72 bp):
TCATTAAGTCATTTGAATTTTGAGAGAAATTGGTTTGTAGAAAAGTCATTCAAATGAAGATTGAA
TTCTCTT
Found at i:41373 original size:45 final size:45
Alignment explanation
Indices: 41322--41415 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
41312 TGCTCTGCTG
41322 CCAATATGTCCAAAGACCCAAGGCAAGGCTTTGGTGAAGCCAGAA
1 CCAATATGTCCAAAGACCCAAGGCAAGGCTTTGGTGAAGCCAGAA
41367 CCAATATGTCCAAAGACCCAAGGCAAGGCTTTGGTGAAGCCAGAA
1 CCAATATGTCCAAAGACCCAAGGCAAGGCTTTGGTGAAGCCAGAA
41412 CCAA
1 CCAA
41416 GGATATCGGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (45 bp):
CCAATATGTCCAAAGACCCAAGGCAAGGCTTTGGTGAAGCCAGAA
Found at i:42014 original size:2 final size:2
Alignment explanation
Indices: 42007--42040 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
41997 GGCCTCGTTA
42007 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42041 CCTTCCTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:42929 original size:12 final size:12
Alignment explanation
Indices: 42903--42950 Score: 69
Period size: 12 Copynumber: 3.9 Consensus size: 12
42893 AGGTATCCAT
42903 GGATATATCGAAC
1 GGATATATCG-AC
42916 GGATATATCGAC
1 GGATATATCGAC
* *
42928 GGGTATACCGAC
1 GGATATATCGAC
42940 GGATATATCGA
1 GGATATATCGA
42951 AGTATCGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 21 0.68
13 10 0.32
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (12 bp):
GGATATATCGAC
Found at i:44015 original size:3 final size:3
Alignment explanation
Indices: 44007--44052 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
43997 TCATTTCCCC
44007 CAT CAT CAT CAT CAT CAT CA- CAT CAT CAT CA- CAT CAT CAT CA- CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
44052 C
1 C
44053 GGGAATATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (3 bp):
CAT
Found at i:44032 original size:11 final size:11
Alignment explanation
Indices: 44007--44052 Score: 83
Period size: 11 Copynumber: 4.1 Consensus size: 11
43997 TCATTTCCCC
44007 CATCATCATCAT
1 CATCATCA-CAT
44019 CATCATCACAT
1 CATCATCACAT
44030 CATCATCACAT
1 CATCATCACAT
44041 CATCATCACAT
1 CATCATCACAT
44052 C
1 C
44053 GGGAATATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 26 0.76
12 8 0.24
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (11 bp):
CATCATCACAT
Found at i:44032 original size:14 final size:15
Alignment explanation
Indices: 44007--44052 Score: 71
Period size: 14 Copynumber: 3.3 Consensus size: 15
43997 TCATTTCCCC
44007 CATCATCATCATCAT
1 CATCATCATCATCAT
44022 CATCA-CATCATCAT
1 CATCATCATCATCAT
44036 CA-CATCATCATCA-
1 CATCATCATCATCAT
44049 CATC
1 CATC
44053 GGGAATATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.14
14 20 0.69
15 5 0.17
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (15 bp):
CATCATCATCATCAT
Found at i:44309 original size:10 final size:10
Alignment explanation
Indices: 44294--44319 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
44284 AATTTAATAT
44294 GGATATTTAC
1 GGATATTTAC
44304 GGATATTTAC
1 GGATATTTAC
44314 GGATAT
1 GGATAT
44320 ATTGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (10 bp):
GGATATTTAC
Found at i:44447 original size:12 final size:12
Alignment explanation
Indices: 44430--44468 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
44420 GTATAGATAT
44430 CGGATATATCGA
1 CGGATATATCGA
44442 CGGATATATCGA
1 CGGATATATCGA
44454 -GG---TATCGA
1 CGGATATATCGA
44462 CGGATAT
1 CGGATAT
44469 TTAATTCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
8 6 0.26
9 2 0.09
11 2 0.09
12 13 0.57
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (12 bp):
CGGATATATCGA
Found at i:45240 original size:80 final size:80
Alignment explanation
Indices: 45107--45266 Score: 275
Period size: 80 Copynumber: 2.0 Consensus size: 80
45097 AAAGTGGTTT
45107 CGGATCTTAGACGACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTGGGAAGGGAAATAAAAA
1 CGGATCTTAGACGACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTGGGAAGGGAAATAAAAA
45172 CGAGGGGGAGTTGCA
66 CGAGGGGGAGTTGCA
** * * *
45187 CGGATCTTAGACGACTTTTGAAGATGGGTTGGTTGGAAAACCTATTTTGGGAAGGGAAATGAAAA
1 CGGATCTTAGACGACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTGGGAAGGGAAATAAAAA
45252 CGAGGGGGAGTTGCA
66 CGAGGGGGAGTTGCA
45267 TAACGAATGC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.32, C:0.11, G:0.33, T:0.24
Consensus pattern (80 bp):
CGGATCTTAGACGACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTGGGAAGGGAAATAAAAA
CGAGGGGGAGTTGCA
Found at i:50484 original size:12 final size:12
Alignment explanation
Indices: 50467--50491 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50457 TTAATTCACA
50467 CCCCCCCACCCC
1 CCCCCCCACCCC
50479 CCCCCCCACCCC
1 CCCCCCCACCCC
50491 C
1 C
50492 AATGTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.92, G:0.00, T:0.00
Consensus pattern (12 bp):
CCCCCCCACCCC
Found at i:54038 original size:40 final size:41
Alignment explanation
Indices: 53903--54233 Score: 397
Period size: 41 Copynumber: 8.2 Consensus size: 41
53893 ATTGAGGGCC
* *
53903 AATGTGAATTAAGGCAAGTTCAATGTCAATTGGGAAATTTG
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
* * *
53944 AATGTGAATGAAGGCAAGTTCAATGTGATTTGGG--A-TTG
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
*
53982 AATGTGAAT-AAGGCAAGTTCAATGTCATTTGGGAAAGTTG
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
* ** * *
54022 GATGTGAAT-AAGGCAAGTTCAATGTTGATTGGAAAATTTG
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
* * * *
54062 GATGTGAATCAAGGCTAGTTCAATGTCAATT-GGAAAATTC
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
* * *
54102 AGATGTGAAT-AAGGCAAGTTCAATGTTAATTGGAAAATTTG
1 A-ATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
*
54143 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGTAAAGTTG
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
* ** *
54184 GATGTGAATCAAGGCAAGTTCAATGTTTATTGGGAAAGTTA
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
54225 AATGTGAAT
1 AATGTGAAT
54234 GTGCCGCGTA
Statistics
Matches: 252, Mismatches: 31, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
37 23 0.09
38 12 0.05
39 2 0.01
40 79 0.31
41 136 0.54
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (41 bp):
AATGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTG
Found at i:54039 original size:20 final size:20
Alignment explanation
Indices: 53902--54209 Score: 137
Period size: 20 Copynumber: 15.3 Consensus size: 20
53892 CATTGAGGGC
53902 CAATGTGAATTAAGGCAAGTT
1 CAATGTGAA-TAAGGCAAGTT
* ** * *
53923 CAATGTCAATTGGGAAATTT
1 CAATGTGAATAAGGCAAGTT
*
53943 GAATGTGAATGAAGGCAAGTT
1 CAATGTGAAT-AAGGCAAGTT
** *
53964 CAATGTG-ATTTGG-GA-TT
1 CAATGTGAATAAGGCAAGTT
*
53981 GAATGTGAATAAGGCAAGTT
1 CAATGTGAATAAGGCAAGTT
* * ** *
54001 CAATGTCATTTGGGAAAGTT
1 CAATGTGAATAAGGCAAGTT
**
54021 GGATGTGAATAAGGCAAGTT
1 CAATGTGAATAAGGCAAGTT
* * *
54041 CAATGTTG-AT-TGGAAAATTT
1 CAATG-TGAATAAGG-CAAGTT
** *
54061 GGATGTGAATCAAGGCTAGTT
1 CAATGTGAAT-AAGGCAAGTT
* * * *
54082 CAATGTCAAT-TGGAAAATT
1 CAATGTGAATAAGGCAAGTT
54101 CAGATGTGAATAAGGCAAGTT
1 CA-ATGTGAATAAGGCAAGTT
* * * *
54122 CAATGTTAAT-TGGAAAATTT
1 CAATGTGAATAAGG-CAAGTT
*
54142 GAATGTGAATCAAGGCAAGTT
1 CAATGTGAAT-AAGGCAAGTT
* * *
54163 CAATGTCAAT-TGGTAAAGTT
1 CAATGTGAATAAGG-CAAGTT
**
54183 GGATGTGAATCAAGGCAAGTT
1 CAATGTGAAT-AAGGCAAGTT
54204 CAATGT
1 CAATGT
54210 TTATTGGGAA
Statistics
Matches: 196, Mismatches: 74, Indels: 34
0.64 0.24 0.11
Matches are distributed among these distances:
17 8 0.04
18 5 0.03
19 18 0.09
20 98 0.50
21 61 0.31
22 6 0.03
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (20 bp):
CAATGTGAATAAGGCAAGTT
Found at i:54107 original size:81 final size:81
Alignment explanation
Indices: 53903--54233 Score: 424
Period size: 81 Copynumber: 4.1 Consensus size: 81
53893 ATTGAGGGCC
* * * *
53903 AATGTGAATTAAGGCAAGTTCAATGTCAATTGGGAAATTTGAATGTGAATGAAGGCAAGTTCAAT
1 AATGTGAATCAAGGCAAGTTCAATGTCAATT-GGAAAATTGGATGTGAATCAAGGCAAGTTCAAT
*
53968 G-TGATTTGG--GA-TTG
65 GTTGA-TTGGAAAATTTG
* *
53982 AATGTGAAT-AAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAAT-AAGGCAAGTTCAAT
1 AATGTGAATCAAGGCAAGTTCAATGTCAATT-GGAAAATTGGATGTGAATCAAGGCAAGTTCAAT
54045 GTTGATTGGAAAATTTG
65 GTTGATTGGAAAATTTG
* * *
54062 GATGTGAATCAAGGCTAGTTCAATGTCAATTGGAAAATTCAGATGTGAAT-AAGGCAAGTTCAAT
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGAAAATT-GGATGTGAATCAAGGCAAGTTCAAT
*
54126 GTTAATTGGAAAATTTG
65 GTTGATTGGAAAATTTG
*
54143 AATGTGAATCAAGGCAAGTTCAATGTCAATTGGTAAAGTTGGATGTGAATCAAGGCAAGTTCAAT
1 AATGTGAATCAAGGCAAGTTCAATGTCAATTGG-AAAATTGGATGTGAATCAAGGCAAGTTCAAT
* * * *
54208 GTTTATTGGGAAAGTTA
65 GTTGATTGGAAAATTTG
54225 AATGTGAAT
1 AATGTGAAT
54234 GTGCCGCGTA
Statistics
Matches: 226, Mismatches: 18, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
77 19 0.08
78 40 0.18
79 10 0.04
80 18 0.08
81 98 0.43
82 41 0.18
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (81 bp):
AATGTGAATCAAGGCAAGTTCAATGTCAATTGGAAAATTGGATGTGAATCAAGGCAAGTTCAATG
TTGATTGGAAAATTTG
Found at i:58589 original size:332 final size:331
Alignment explanation
Indices: 56789--59861 Score: 3709
Period size: 332 Copynumber: 9.3 Consensus size: 331
56779 ATTCTTTACA
* * *
56789 GATTTGTTTTTACGAGCATCTGAAGC-TGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* * ** *
56853 GAAAAATGATATTAGAA-CGTGAAAAA-CATTAAAATT-TTTGTTGTTGTTGGATTATATGATTT
66 GAAAAACGATATTAGAAGCGTGAAAAACCCTT--AATTGTTT-TTGGCGTTGAATTATATGATTT
* * * *
56915 TTCTGAGTATTGTGGAAAAAAATTGAGGAAAAACTTTTTGGGTCAGTTTTTTGCAAAATTTTAGC
128 TTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGC
* * * *
56980 TGAAATCGTGTATTAACCATCACGGTTTTTTTTGCTAAAAACGAGTTTCGGGGCTCTGGCTCAGT
193 TGAAATCGTGTACT-ACCATCACGG--TTTTTGGCTAAAAATGAGTTTCGGGGCCCT-GCTCAGT
* *
57045 TTTGCAAGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAGTCTTAGCCA
254 TTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCTTAGCCA
57110 CAATGGATTTAAG
319 CAATGGATTTAAG
*
57123 GATTTATTTTTACCAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAAAA
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG--AAAAAAA
* * * *
57188 TTGAAAAACGATATTAGAAGCGTGAAAAAGCCTTCATTGTTTTTGGCATTGAATTATATGATTTT
64 TGGAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTT
* *
57253 TCTGAGTATTGTGGCAAAAAATTGGGGAAAAAC-TTTCGGGTAAGTTTTTTGCAAAATTTTAACC
129 TCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCT
* *
57317 GAAATCGTG---TA-CATCACGGTTTTTGGCTAAAAATGTGTTTCGTGGCCCTGACTCAGTTTTG
194 GAAATCGTGTACTACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCCCTG-CTCAGTTTTG
* * * *
57378 CATGAATTTTGGCAGAAAAACTTCTCG----A-A-ATATTCATCTAATCAAATCTCTCAGCCACA
258 CATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCT-T-AGCCACA
*
57437 ATGGATTTACG
321 ATGGATTTAAG
* * * ** * *
57448 GATTTATCTTTACGAGTATCTGAATCTTCTTTCGATTTAATTCGAAATGTATTGTAGCAAAAAAT
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAGAAAAAAAT
* * * * * * *
57513 GGAAAAACGATATTAGAAACATAAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTT
65 GGAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTTT
* ** *
57578 CTGAGTATTGTGGTAAAAAATTGGGGAAAATTTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCC
130 CTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAG-TTTTTTGCAAAATTTTAG-C
* * * *
57643 T-AAATCGTGTAC-ACCATCACGGTTTTTGGCTGAAAACGTGTTTCGGGACCCTGACTCAGTTTT
193 TGAAATCGTGTACTACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCCCTG-CTCAGTTTT
* * * *** * *
57706 GCATGATTTTTTGCAA-AAAGGCTCCTCAAAATATCCGCTA-TCATCTAACCAAATCTCAGCCAC
257 GCATGA-TTTTTGGAAGAAAGACTCCTCGAAATAT-ATATATTCATCTAATCAAATCTTAGCCAC
*
57769 ATTGGATTTACA-
320 AATGGATTTA-AG
* * * *
57781 CATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* * * **
57846 GAAAAACGATATTAGAAACGTGAAAAA-CATTAAAAAAT-TTTTTGTTGTTGAATTATATGATTT
66 GAAAAACGATATTAGAAGCGTGAAAAACCCTT---AATTGTTTTTGGCGTTGAATTATATGATTT
* *
57909 TTCTGAGTATTGTGGCAAAAATTTGGGGAAAAACTTTTCGGGTAAGTTTTTTACAAAATTTTAGC
128 TTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGC
* *
57974 TGAAATC--G--------T----GTTTTTGGCTAAAAATGCGTTTCGGGGCTCTGGCTCAGTTTT
193 TGAAATCGTGTACTACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCCCT-GCTCAGTTTT
* *
58025 GCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAGTCTTAGTCACAA
257 GCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCTTAGCCACAA
58090 TGGATTTAAG
322 TGGATTTAAG
* * *
58100 GATTTATTTTTACCAGTATCTGAATCTTGTTACGATTTAATTAGAAATAAATTCAGAAAAAAATA
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* * * *
58165 G-AAAACGATATTAGAAGCGTGAAAGACCCTTCATTGTTTTTGGTGTTGAATTACATGATTTTTC
66 GAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTTTC
* * * * *
58229 TGAATATTGTGGGAAAAAATTAGGGAAAAACTTTTCGGGTCAGTTTTTTACAAAATTTTAGCTGA
131 TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCTGA
* *
58294 AATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCTCTGCTTAGTTTTGCA
196 AATCGTGTACT-ACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCCCTGCTCAGTTTTGCA
* *
58359 TGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAGTCTTAGCCACAATGA
260 TGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCTTAGCCACAATGG
58424 ATTTAAG
325 ATTTAAG
* *
58431 GATTTATTTTTACCAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATT
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* *
58496 GAAAAACGATATTAGAAGCGTGAAAAACCCTTCATTGTTTTTGGCGTTGAATTATATGATTTTTA
66 GAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTTTC
* *
58561 TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAACCGA
131 TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCTGA
** *
58626 AATCGTGTAC--CCATCACGGTTTTTGGCTAAAAATGTTTTTCGTGGCCCTGACTCAGTTTTGCA
196 AATCGTGTACTACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCCCTG-CTCAGTTTTGCA
* * * *
58689 TGAATTTTGGCAGAAAGACTTCTCGAAATATTTATATTCATCTAATCAAATCTCTCAGCCACAAT
260 TGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCT-T-AGCCACAAT
*
58754 GGATTTACG
323 GGATTTAAG
* * * * ** * *
58763 GATTTATCTTTATGAGTATCTGAATCTTTTTTCGATTTAATTCGAAATGTATTGTAGCAAAAAAT
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAGAAAAAAAT
* * * * * *
58828 GGAAAAACGATATTAGAAGCATAAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTT
65 GGAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTTT
* ** * *
58893 CTGAGTATTGTGGCAAAAAATTAGGGAAAATTTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
130 CTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCTG
* * * *
58958 AAATCGTGTCCTAACCATCACGGTTTTTGGCTGAAAACGCA-TTTCGGGACCCTGACTCAGTTTT
195 AAATCGTGTACT-ACCATCACGGTTTTTGGCTAAAAATG-AGTTTCGGGGCCCTG-CTCAGTTTT
* * * **** * * * *
59022 GCATGATTTTTTGCAGAAAGGCTCCTCGAAATATCCGCAATCATCTAACCAAATCTCAGCCACAT
257 GCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCTTAGCCACAA
59087 TGGATTTATA-
322 TGGATTTA-AG
* * * *
59097 TATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* ** ***
59162 GAAAAACGATATTAGAACCGTGAAAAACATTATAATT-TTTTTGTTATTGAATTATATGATTTTT
66 GAAAAACGATATTAGAAGCGTGAAAAACCCT-TAATTGTTTTTGGCGTTGAATTATATGATTTTT
* * *
59226 CTGAGTATTGTGGCAAAATATTGGGGAAAAACTTTTCGGGTAAGTTTTTTACAAAATTATAGCTG
130 CTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCTG
* * * * *
59291 AAATCGTGTAC-GCAAT--CGTGTTTTTGGCTAAAAATGCGTTTCGGGGCTCTGGCTCAATTTTG
195 AAATCGTGTACTACCATCACG-GTTTTTGGCTAAAAATGAGTTTCGGGGCCCT-GCTCAGTTTTG
*
59353 CATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAGTCTTAGCCACAAT
258 CATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCTTAGCCACAAT
59418 GGATTTAAG
323 GGATTTAAG
** *
59427 GATTTATTTTTACCTGTATCTGAATCTTGTTTCGATTTAATAAGAAATAAATTCAGAAAAAAAAA
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG--AAAAAAA
* * *
59492 TGGAAAAACAATATTAGAAGCGTGAAAAACCATTCATTGTTTTTGGCGTTGAATTATATGATTTT
64 TGGAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTT
* * * *
59557 TCTAAGTATTGTAGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGTAAAATTTTAGCC
129 TCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCT
* * * * **
59622 GAAATCGTGTACTAACCATTACGGTTTTTGGCTGAAAATGCGTTTCGTGGCCCCAACTCAGTTTT
194 GAAATCGTGTACT-ACCATCACGGTTTTTGGCTAAAAATGAGTTTCG-GGGCCCTGCTCAGTTTT
** * * * *
59687 ATATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAATCAAATCTCTTAGCCAC
257 GCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAA--TCTTAGCCAC
*
59752 AATGGATTTACG
320 AATGGATTTAAG
* * * ** ** *
59764 GATTTATTTTTACGAGTATCTGAATCTTCTTTCGATTTAGTTCGAAATGTATTGTGGCAAAAAAT
1 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAGAAAAAAAT
*
59829 GGAAAAACGATATTAGAAGCATG-AAAACCCTTA
65 GGAAAAACGATATTAGAAGCGTGAAAAACCCTTA
Statistics
Matches: 2360, Mismatches: 302, Indels: 153
0.84 0.11 0.05
Matches are distributed among these distances:
316 2 0.00
317 90 0.04
318 34 0.01
319 148 0.06
320 1 0.00
323 20 0.01
324 94 0.04
325 75 0.03
326 27 0.01
327 1 0.00
328 3 0.00
329 155 0.07
330 210 0.09
331 167 0.07
332 406 0.17
333 387 0.16
334 90 0.04
335 129 0.05
336 162 0.07
337 143 0.06
338 13 0.01
339 3 0.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.36
Consensus pattern (331 bp):
GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
GAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTGTTTTTGGCGTTGAATTATATGATTTTTC
TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTAAGTTTTTTGCAAAATTTTAGCTGA
AATCGTGTACTACCATCACGGTTTTTGGCTAAAAATGAGTTTCGGGGCCCTGCTCAGTTTTGCAT
GATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCTTAGCCACAATGGA
TTTAAG
Done.