Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012666.1 Corchorus olitorius cultivar O-4 contig12699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40879

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--41
2
17.5
2
100
0
70
48
0
0
51
1.00
8026--8064
17
2.4
16
83
8
51
20
12
15
51
1.76
16114--16155
17
2.5
17
80
7
50
54
0
42
2
1.13
17944--17996
16
3.3
16
72
0
61
32
3
11
52
1.55
21438--21477
18
2.2
18
100
0
80
32
12
22
32
1.91
21965--21991
14
1.9
14
100
0
54
40
14
37
7
1.74
24152--24194
21
2.0
22
90
4
70
9
18
4
67
1.36
28889--28916
1
28.0
1
100
0
56
100
0
0
0
0.00
32397--32443
23
2.0
23
83
0
58
19
21
19
40
1.92
37093--37124
16
2.0
16
93
0
55
53
18
3
25
1.59

Tables:   1

The End!