Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001267.1 Corchorus olitorius cultivar O-4 contig01267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1310
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34


Found at i:939 original size:33 final size:33

Alignment explanation


    Indices: 897--961  Score: 112
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        887 CCGCCCTAGG

                                 *           
        897 TGGGCGGCATGGCCATGGTAATGCCACCCTCGC
          1 TGGGCGGCATGGCCATGGTAAAGCCACCCTCGC

                                     *      
        930 TGGGCGGCATGGCCATGGTAAAGCCGCCCTCG
          1 TGGGCGGCATGGCCATGGTAAAGCCACCCTCG

        962 GAGGATGGCA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.15, C:0.32, G:0.35, T:0.17


Consensus pattern (33 bp):   
TGGGCGGCATGGCCATGGTAAAGCCACCCTCGC
Done.