Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012671.1 Corchorus olitorius cultivar O-4 contig12704, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122325

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4291--4321
15
2.1
15
93
0
53
83
0
3
12
0.75
21429--21766
181
1.9
181
96
0
622
24
24
19
31
1.98
26627--26652
8
3.2
8
100
0
52
65
0
34
0
0.93
28649--28750
51
2.0
50
81
9
118
22
22
13
41
1.89
38047--38147
27
3.7
26
85
7
139
35
27
17
18
1.94
40704--40809
53
2.0
53
94
0
185
50
17
14
16
1.77
41916--41976
32
1.9
32
83
12
81
26
1
0
72
0.94
41938--42067
65
2.0
65
91
5
210
30
6
4
58
1.45
42140--43198
530
2.0
530
98
0
2030
35
20
12
30
1.90
47140--47212
29
2.4
29
84
4
101
32
15
26
26
1.95
47140--47243
31
3.4
30
79
11
106
31
16
25
25
1.96
50396--50508
56
2.0
56
96
0
208
23
16
14
45
1.84
60671--60801
42
3.1
42
90
2
201
23
19
24
32
1.98
62539--62564
13
2.0
13
100
0
52
23
7
15
53
1.67
63488--63518
10
3.0
10
95
4
53
19
29
0
51
1.47
63489--63524
11
3.4
11
92
3
56
16
25
2
55
1.55
67753--67800
23
2.1
23
85
14
64
37
29
10
22
1.88
79358--79395
20
1.9
20
88
0
58
21
18
28
31
1.97
79833--79888
21
2.7
21
82
0
67
17
1
25
55
1.52
79854--79895
21
2.0
21
85
0
57
16
0
23
59
1.37
80042--80066
10
2.5
10
100
0
50
8
8
28
56
1.57
81753--81810
25
2.4
24
72
11
57
6
39
12
41
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89272--89340
3
23.3
3
92
2
95
39
0
27
33
1.57
89285--89348
32
2.0
32
96
0
119
45
0
23
31
1.53
89282--89351
35
2.0
35
100
0
140
45
0
22
31
1.53
89339--89363
3
8.3
3
100
0
50
68
0
0
32
0.90
92639--92666
8
3.5
8
100
0
56
0
10
10
78
0.96
96243--96431
90
2.1
90
83
0
234
25
14
26
33
1.95
99265--99803
214
2.5
214
96
0
979
33
26
20
19
1.96
103228--103254
2
13.5
2
100
0
54
48
0
0
51
1.00
106242--106293
22
2.4
22
87
6
70
34
17
7
40
1.78
109800--109892
28
3.4
26
79
10
105
34
11
6
47
1.66
110186--110226
22
2.0
22
85
9
59
63
7
12
17
1.50
113397--113495
3
33.0
3
95
0
180
66
2
0
31
1.03
113965--114014
3
16.7
3
95
0
91
36
0
0
64
0.94
115653--115681
13
2.1
14
93
6
51
27
6
3
62
1.37
116676--116714
16
2.4
16
87
8
53
64
12
7
15
1.49
121713--121771
28
2.1
27
78
6
73
40
16
6
35
1.76
121778--121843
28
2.2
29
84
12
82
36
6
9
48
1.60
122098--122136
16
2.4
16
87
8
53
64
12
7
15
1.49

Tables:   1

The End!