Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012672.1 Corchorus olitorius cultivar O-4 contig12705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28112

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1124--1186
30
2.1
30
93
0
108
31
1
14
52
1.51
1444--1495
22
2.4
22
93
0
86
23
7
11
57
1.59
1547--1597
23
2.4
20
76
17
57
31
9
19
39
1.84
1660--2071
206
2.0
206
92
0
691
24
24
19
31
1.98
2291--2320
1
30.0
1
93
0
51
0
3
0
96
0.21
2291--2325
15
2.4
15
90
4
54
0
8
0
91
0.42
2291--2323
12
2.8
12
95
4
59
0
6
0
93
0.33
7978--8017
18
2.2
18
86
4
53
45
2
22
30
1.66
8976--9014
15
2.6
15
88
8
53
48
0
0
51
1.00
14116--14170
21
2.6
21
88
0
74
16
49
21
12
1.79
15076--15192
28
4.3
27
85
3
153
19
18
23
38
1.93
15073--15193
55
2.2
55
83
4
163
19
18
23
38
1.93
18458--18493
18
2.1
18
89
5
56
38
5
11
44
1.63
19336--19375
19
2.2
18
86
4
53
47
2
22
27
1.64
20747--20785
21
1.9
21
89
5
62
10
7
10
71
1.30
21429--21463
15
2.3
15
90
0
52
25
14
2
57
1.51

Tables:   1

The End!