Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012674.1 Corchorus olitorius cultivar O-4 contig12707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40039

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7984--8480
34
14.9
34
83
9
630
27
18
1
52
1.56
7984--8480
67
7.4
67
90
3
652
27
18
1
52
1.56
7984--8441
101
4.6
101
90
4
630
28
18
1
51
1.55
8529--8599
22
3.2
22
91
2
115
22
19
4
53
1.62
9015--9128
22
5.0
22
90
3
165
20
16
6
57
1.61
9727--10030
51
6.0
51
79
3
220
35
21
6
36
1.79
16209--16254
20
2.3
20
100
0
92
36
30
23
8
1.85
16156--16304
70
2.1
70
87
4
212
31
31
25
11
1.91
16451--16588
50
2.8
50
84
2
179
28
25
23
21
1.99
16590--16811
116
1.9
116
88
0
336
26
26
32
14
1.95
16701--16885
72
2.6
71
86
5
255
27
27
31
14
1.95
17947--18020
29
2.5
29
86
4
85
40
10
17
31
1.84

Tables:   1

The End!