Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012675.1 Corchorus olitorius cultivar O-4 contig12708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37826

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1076--1129
22
2.5
22
87
0
72
33
11
7
48
1.67
1160--1201
22
1.9
22
85
0
57
28
16
11
42
1.84
1332--1386
22
2.5
23
82
8
78
38
12
10
38
1.79
1344--1411
22
3.1
22
86
0
91
36
16
11
35
1.85
1356--1734
22
17.9
21
68
17
189
34
18
8
38
1.82
1772--1919
66
2.2
66
80
0
152
35
16
9
39
1.81
1748--2001
22
11.5
22
69
15
109
33
15
9
40
1.80
2039--2372
22
15.0
22
68
15
125
36
18
8
36
1.82
2195--2302
46
2.4
44
84
6
128
36
14
9
39
1.79
1748--2368
44
13.9
43
70
12
260
34
17
9
38
1.82
2240--2372
66
2.0
66
84
5
171
37
17
9
35
1.83
2737--2775
20
2.0
20
85
10
53
58
2
5
33
1.33
3976--4011
19
1.9
20
88
11
58
30
0
0
69
0.89
3979--4023
19
2.4
19
77
11
56
37
2
0
60
1.09
4884--4997
11
10.8
11
69
7
67
43
3
1
50
1.29
32859--32988
64
2.0
64
95
0
233
33
17
9
40
1.82
35489--35517
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!