Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001268.1 Corchorus olitorius cultivar O-4 contig01268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33


Found at i:632 original size:62 final size:62

Alignment explanation


    Indices: 535--664  Score: 242
    Period size: 62  Copynumber: 2.1  Consensus size: 62

        525 GTTTAGTGGC

                                                                          
        535 GACTCCATTTCCAACGTCGTTTCGACAGGGTTCCCCGGACCCGAACGTTTCGACAGCTTGGA
          1 GACTCCATTTCCAACGTCGTTTCGACAGGGTTCCCCGGACCCGAACGTTTCGACAGCTTGGA

                                                              *          *
        597 GACTCCATTTCCAACGTCGTTTCGACAGGGTTCCCCGGACCCGAACGTTTTGACAGCTTGGC
          1 GACTCCATTTCCAACGTCGTTTCGACAGGGTTCCCCGGACCCGAACGTTTCGACAGCTTGGA

                  
        659 GACTCC
          1 GACTCC

        665 GCTGGGGACA


Statistics
Matches: 66,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  62   66  1.00

ACGTcount: A:0.18, C:0.33, G:0.24, T:0.25


Consensus pattern (62 bp):   
GACTCCATTTCCAACGTCGTTTCGACAGGGTTCCCCGGACCCGAACGTTTCGACAGCTTGGA
Done.