Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012683.1 Corchorus olitorius cultivar O-4 contig12716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49401

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
327--361
17
2.1
17
88
0
52
51
5
11
31
1.61
2165--2198
11
3.1
11
100
0
68
8
44
8
38
1.67
3659--3687
15
1.9
15
100
0
58
13
17
13
55
1.70
8932--8961
15
2.0
15
93
0
51
20
10
26
43
1.83
11793--11823
15
2.1
15
93
0
53
16
29
19
35
1.93
13327--13407
40
2.0
40
97
0
153
37
22
19
20
1.95
13560--13584
13
1.9
13
100
0
50
48
20
0
32
1.50
15181--15215
11
3.2
11
83
0
52
77
17
5
0
0.96
15451--15482
4
7.8
4
96
3
55
78
0
0
21
0.76
16824--16849
11
2.4
11
100
0
52
30
7
7
53
1.57
19217--19255
2
19.5
2
100
0
78
0
48
0
51
1.00
21013--21037
1
25.0
1
100
0
50
100
0
0
0
0.00
29584--29637
21
2.5
22
88
5
76
42
7
9
40
1.65
29741--29792
2
26.0
2
80
7
61
48
1
0
50
1.12
31308--31463
80
2.0
80
90
1
251
33
11
31
23
1.90
39867--39916
24
2.1
24
92
0
82
34
18
12
36
1.87
39933--39973
2
20.5
2
100
0
82
48
0
0
51
1.00
42251--42391
53
2.7
52
76
5
140
48
17
12
22
1.80
42582--42616
17
2.1
17
94
0
61
45
14
14
25
1.82
48337--48492
80
2.0
80
90
1
251
33
11
31
23
1.90

Tables:   1

The End!