Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012688.1 Corchorus olitorius cultivar O-4 contig12721, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16788
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:1205 original size:22 final size:22

Alignment explanation


    Indices: 1158--1205  Score: 53
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       1148 TTCGTGTTTG

                               * *
       1158 AAGACTTATTGAAGATAATTTG
          1 AAGACTTATTGAAGATAATCTC

                             *     
       1180 AAGAC-TATTGAAGAATTATCTC
          1 AAGACTTATTGAAG-ATAATCTC

                
       1202 AAGA
          1 AAGA

       1206 GGAAGAATTG


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  21    8  0.36
  22   14  0.64

ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31


Consensus pattern (22 bp):   
AAGACTTATTGAAGATAATCTC

Found at i:9644 original size:22 final size:22

Alignment explanation


    Indices: 9616--9661  Score: 83
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       9606 AATAAAAAAT

                       *          
       9616 TGTTAATTTAGGAATTTTGAGA
          1 TGTTAATTTAGCAATTTTGAGA

                                  
       9638 TGTTAATTTAGCAATTTTGAGA
          1 TGTTAATTTAGCAATTTTGAGA

              
       9660 TG
          1 TG

       9662 CAACAAGTTG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46


Consensus pattern (22 bp):   
TGTTAATTTAGCAATTTTGAGA
Done.