Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012690.1 Corchorus olitorius cultivar O-4 contig12723, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1873
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29


Found at i:1516 original size:15 final size:14

Alignment explanation


    Indices: 1496--1525  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1486 ATCTTTTTAA

                           
       1496 TTTTCCTTGCATTAT
          1 TTTTCCTTG-ATTAT

                          
       1511 TTTTCCTTGATTAT
          1 TTTTCCTTGATTAT

             
       1525 T
          1 T

       1526 GCTTTGATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63


Consensus pattern (14 bp):   
TTTTCCTTGATTAT
Done.