Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012695.1 Corchorus olitorius cultivar O-4 contig12728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5257
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26


Found at i:3915 original size:34 final size:34

Alignment explanation


    Indices: 3835--3915  Score: 83
    Period size: 37  Copynumber: 2.2  Consensus size: 34

       3825 TGGCAGGCTA

                                                  
       3835 TCCGCGCCAAGCAGCAAGCCGCTGCTGCTGCCTAGCCC
          1 TCCGCG-C-AGCAGCAAGCCGCTGCTGCTGCCTAG--C

            *                *                  
       3873 GCGCGCGCAGCAGCAAGTCGCTGCTGCTGCCTCAG-
          1 TC-CGCGCAGCAGCAAGCCGCTGCTGCTGCCT-AGC

                    
       3908 TCCGCGCA
          1 TCCGCGCA

       3916 CAAGGTAGCG


Statistics
Matches: 38,  Mismatches: 3, Indels: 8
        0.78            0.06        0.16

Matches are distributed among these distances:
  34    6  0.16
  35    1  0.03
  37   23  0.61
  38    4  0.11
  39    4  0.11

ACGTcount: A:0.15, C:0.42, G:0.30, T:0.14


Consensus pattern (34 bp):   
TCCGCGCAGCAGCAAGCCGCTGCTGCTGCCTAGC
Done.