Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012696.1 Corchorus olitorius cultivar O-4 contig12729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10166
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:5627 original size:16 final size:15

Alignment explanation


    Indices: 5589--5630  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       5579 ACAGAGATTG

                   *       
       5589 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
       5604 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       5619 ACTAGAAAACAA
          1 AC-AGAAAACAA

       5631 AGCAGAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA

Found at i:8472 original size:14 final size:15

Alignment explanation


    Indices: 8453--8482  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       8443 CAATCAAAGC

                           
       8453 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       8467 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       8482 A
          1 A

       8483 TTAAAAAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Done.