Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001270.1 Corchorus olitorius cultivar O-4 contig01270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2336
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30


Found at i:298 original size:25 final size:24

Alignment explanation


    Indices: 270--322  Score: 72
    Period size: 25  Copynumber: 2.2  Consensus size: 24

        260 AAGATATAGC

                                      
        270 AGCCCAACAAC-AAAAATAAAAGGGA
          1 AGCCCAA-AACGAAAAATAAAA-GGA

                       *            
        295 AGCCCAAAACGCAAAATAAAAGGA
          1 AGCCCAAAACGAAAAATAAAAGGA

                
        319 AGCC
          1 AGCC

        323 TAAAGAAAAT


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  24   10  0.38
  25   16  0.62

ACGTcount: A:0.57, C:0.23, G:0.17, T:0.04


Consensus pattern (24 bp):   
AGCCCAAAACGAAAAATAAAAGGA
Done.