Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012701.1 Corchorus olitorius cultivar O-4 contig12734, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45681

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
647--1160
251
2.0
253
93
1
899
36
16
20
26
1.94
4111--4291
92
1.9
94
90
4
287
49
14
9
27
1.74
6724--6763
21
1.9
21
85
10
55
17
22
30
30
1.97
11029--11067
21
1.9
21
89
5
62
15
23
35
25
1.94
12668--12752
41
2.1
41
97
0
161
48
27
4
20
1.69
12685--13081
148
2.7
146
92
3
660
48
27
5
18
1.70
17157--17209
23
2.3
23
96
0
97
45
9
37
7
1.65
18904--18951
25
2.0
25
87
4
71
52
0
2
45
1.12
18936--19439
22
22.9
22
67
13
101
38
15
8
38
1.77
19007--20125
44
25.1
43
71
14
382
36
17
8
36
1.81
19225--19392
62
2.6
64
80
16
186
38
15
8
38
1.78
19383--19431
23
2.1
23
85
7
64
32
12
2
53
1.50
19007--19442
22
19.8
22
69
10
196
37
16
8
37
1.80
19563--19666
22
4.7
22
75
9
86
33
23
9
33
1.87
19512--19655
66
2.2
66
84
2
182
33
23
9
33
1.88
19539--19680
66
2.2
64
88
2
203
32
20
10
36
1.87
19763--20111
22
15.9
22
75
11
254
36
16
8
37
1.80
19942--19995
27
2.0
27
92
0
90
33
12
5
48
1.65
19920--20014
49
2.0
48
91
2
154
35
15
7
41
1.76
19739--20148
22
18.6
23
72
14
132
37
16
9
37
1.80
21824--22356
125
4.3
125
87
1
736
30
17
15
35
1.92
25360--25413
18
3.1
17
81
13
65
46
0
1
51
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25371--25404
16
2.1
16
94
0
59
44
0
0
55
0.99
25373--25414
18
2.4
17
88
11
66
54
0
0
45
0.99
26370--26411
18
2.4
17
92
8
66
40
0
0
59
0.97
26372--26424
17
3.1
18
76
17
51
49
1
0
49
1.12
26371--26424
18
2.9
18
83
10
65
48
1
0
50
1.11
29715--30101
178
2.2
177
82
3
481
33
14
15
35
1.88
30444--30511
33
2.1
33
97
0
127
48
11
22
17
1.79
38855--38905
21
2.4
21
86
0
75
19
41
19
19
1.91
43827--43937
43
2.5
44
80
11
120
35
17
28
18
1.94

Tables:   1

The End!