Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012706.1 Corchorus olitorius cultivar O-4 contig12739, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36197
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Found at i:9990 original size:51 final size:50
Alignment explanation
Indices: 9889--9990 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 50
9879 GTTCTTCATA
* **
9889 TTTTCTTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCTTTTAGTGT
1 TTTTCTTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT
*
9939 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
1 TTTTCT-TTGTTT-AGATCTTGTCTCCGGACAAACAAACACTCGTACA-GTGT
9990 T
1 T
9991 CTTCATTCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
50 8 0.18
51 36 0.80
52 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (50 bp):
TTTTCTTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT
Found at i:14323 original size:20 final size:21
Alignment explanation
Indices: 14286--14324 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14276 CGGCTTTTTG
14286 TTTTTTTTTATGAGTTAATAA
1 TTTTTTTTTATGAGTTAATAA
14307 TTTTTATTTTA-GA-TTAAT
1 TTTTT-TTTTATGAGTTAAT
14325 TAAATTCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (21 bp):
TTTTTTTTTATGAGTTAATAA
Found at i:15098 original size:87 final size:87
Alignment explanation
Indices: 14863--15167 Score: 493
Period size: 87 Copynumber: 3.5 Consensus size: 87
14853 AAGGCAACAG
* *
14863 TCAAGAAGTTCTAATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCACAA
1 TCAAGAAGTTTTAATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCGCAA
* * *
14928 ATTGGTCCTCTTTCAAGGCAACAG
66 ATTGGTCCTCTTTC-A-TCATCAA
*
14952 TCAAGAAGATTTAATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCGCAA
1 TCAAGAAGTTTTAATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCGCAA
*
15017 ATTGGTCCTATTTCATCATCAA
66 ATTGGTCCTCTTTCATCATCAA
*
15039 TCAAGAAGTTTTGATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCGCAA
1 TCAAGAAGTTTTAATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCGCAA
15104 ATTGGTCCTCTTTCATCATCAA
66 ATTGGTCCTCTTTCATCATCAA
* * *
15126 TCAAGAAGTTGTAATCACAACATCAGATTTAGAGTTATTTTT
1 TCAAGAAGTTTTAATCACAACATCAGACTCAGAGTTATTTTT
15168 GAAAGGTATT
Statistics
Matches: 202, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
87 126 0.62
88 1 0.00
89 75 0.37
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32
Consensus pattern (87 bp):
TCAAGAAGTTTTAATCACAACATCAGACTCAGAGTTATTTTTCAAGTTATCAAAGTTGACCGCAA
ATTGGTCCTCTTTCATCATCAA
Found at i:15364 original size:69 final size:69
Alignment explanation
Indices: 15266--15628 Score: 627
Period size: 69 Copynumber: 5.2 Consensus size: 69
15256 TTCCATGAGT
* *
15266 CAAACTCATTTCCATAAGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
15331 AAGC
66 AAGC
15335 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
15400 AAGC
66 AAGC
*
15404 CAAACTCGTTTCCGTACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTTCCA
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGC-TTTTCCA
15469 CAAGC
65 CAAGC
* * * *
15474 CAAACTCGTTTCCAAATGAGTCAGTTTAAGCGTTGGTTTCATCAAAGCCACATAGGCTTTTCCAC
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
15539 AAGC
66 AAGC
* *
15543 CAAACTCGTTTCCATACAAGTCTGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
15608 AAGC
66 AAGC
*
15612 CAAATTCGTTTCCATAC
1 CAAACTCGTTTCCATAC
15629 AGTGCATTAC
Statistics
Matches: 278, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
69 214 0.77
70 64 0.23
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (69 bp):
CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
AAGC
Found at i:15530 original size:139 final size:138
Alignment explanation
Indices: 15266--15625 Score: 621
Period size: 139 Copynumber: 2.6 Consensus size: 138
15256 TTCCATGAGT
* *
15266 CAAACTCATTTCCATAAGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
* *
15331 AAGCCAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTT
66 AAGCCAAACTCGTTTCCAAACGAGTCAGTTTAAGCCTTGGTTTCATCAAAGCCACATAGGCTTTT
15396 CCACAAGC
131 CCACAAGC
*
15404 CAAACTCGTTTCCGTACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTTCCA
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGC-TTTTCCA
* *
15469 CAAGCCAAACTCGTTTCCAAATGAGTCAGTTTAAGCGTTGGTTTCATCAAAGCCACATAGGCTTT
65 CAAGCCAAACTCGTTTCCAAACGAGTCAGTTTAAGCCTTGGTTTCATCAAAGCCACATAGGCTTT
15534 TCCACAAGC
130 TCCACAAGC
* *
15543 CAAACTCGTTTCCATACAAGTCTGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
1 CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
*
15608 AAGCCAAATTCGTTTCCA
66 AAGCCAAACTCGTTTCCA
15626 TACAGTGCAT
Statistics
Matches: 210, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
138 79 0.38
139 131 0.62
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (138 bp):
CAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTTCATCCAAGCCACATAGGCTTTTCCAC
AAGCCAAACTCGTTTCCAAACGAGTCAGTTTAAGCCTTGGTTTCATCAAAGCCACATAGGCTTTT
CCACAAGC
Found at i:15800 original size:91 final size:92
Alignment explanation
Indices: 15630--15818 Score: 263
Period size: 91 Copynumber: 2.1 Consensus size: 92
15620 TTTCCATACA
* * *
15630 GTGCATTACCTTTTTTCAAGATCGGACTCGGTGAGCTCGGTGCAGCAAATCTTCAAAGAAATCAG
1 GTGCATTACCTATTTTCAAGATCGCACTCGATGAGCTCGGTGCAGCAAATCTTCAAAGAAATCAG
*
15695 GGTGATTCGATGAATCAAGTTAATGCG
66 GGTGATTCGATGAATCAAGTCAATGCG
* * * * *
15722 GTGCATTACC-ATTTTCAAGATTGCACTCGATGAGCTCGGTGTAGGAAATCTTCAAATAGATCAG
1 GTGCATTACCTATTTTCAAGATCGCACTCGATGAGCTCGGTGCAGCAAATCTTCAAAGAAATCAG
* * *
15786 GGTGTTTCGGTGAATCAAGTCAATGTG
66 GGTGATTCGATGAATCAAGTCAATGCG
15813 GTGCAT
1 GTGCAT
15819 CTCTTGAAAG
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 75 0.88
92 10 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (92 bp):
GTGCATTACCTATTTTCAAGATCGCACTCGATGAGCTCGGTGCAGCAAATCTTCAAAGAAATCAG
GGTGATTCGATGAATCAAGTCAATGCG
Found at i:16207 original size:27 final size:27
Alignment explanation
Indices: 16139--16209 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
16129 GCTCATCCAC
* *
16139 GGGCATTTTGGTCAGTTGCACGTTTAG
1 GGGCATTTTGGTCATTTGCACATTTAG
*
16166 GGGCATTTTGGTCATTTGCATATTTAG
1 GGGCATTTTGGTCATTTGCACATTTAG
16193 GGGCATTTTGGTCATTT
1 GGGCATTTTGGTCATTT
16210 TAAGTTCTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.15, C:0.13, G:0.30, T:0.42
Consensus pattern (27 bp):
GGGCATTTTGGTCATTTGCACATTTAG
Found at i:16533 original size:13 final size:13
Alignment explanation
Indices: 16515--16539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16505 CACCAAAAAT
16515 TAGAAATTAGAAC
1 TAGAAATTAGAAC
16528 TAGAAATTAGAA
1 TAGAAATTAGAA
16540 GATAAAGCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.24
Consensus pattern (13 bp):
TAGAAATTAGAAC
Found at i:31593 original size:8 final size:8
Alignment explanation
Indices: 31580--31605 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
31570 AGATGTGAAA
31580 TTGATAAT
1 TTGATAAT
31588 TTGATAAT
1 TTGATAAT
31596 TTGATAAT
1 TTGATAAT
31604 TT
1 TT
31606 TCACTACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (8 bp):
TTGATAAT
Found at i:31730 original size:19 final size:18
Alignment explanation
Indices: 31706--31741 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
31696 TGAAGATTTA
31706 TTGAAGACAATTTGAAGAT
1 TTGAAGACAA-TTGAAGAT
*
31725 TTGAAGACCATTGAAGA
1 TTGAAGACAATTGAAGA
31742 ATAATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (18 bp):
TTGAAGACAATTGAAGAT
Found at i:35066 original size:22 final size:22
Alignment explanation
Indices: 35040--35194 Score: 213
Period size: 22 Copynumber: 7.1 Consensus size: 22
35030 TTACTCTAAT
*
35040 CTTCTGATTACTTTTTCTTTTA
1 CTTCTGATTACTCTTTCTTTTA
* *
35062 CTTCTGATTACTCTTTCTTATG
1 CTTCTGATTACTCTTTCTTTTA
**
35084 CTTCTGATTACTCTTTCTTTGG
1 CTTCTGATTACTCTTTCTTTTA
* *
35106 CTTTTGATTACTCTTCCTTTTA
1 CTTCTGATTACTCTTTCTTTTA
*
35128 C-TCTGATTACTATTTCTTTTA
1 CTTCTGATTACTCTTTCTTTTA
*
35149 CTTCTGATTACTCTTTCTTTAA
1 CTTCTGATTACTCTTTCTTTTA
*
35171 CTTCCGATTACTCTTTCTTTTA
1 CTTCTGATTACTCTTTCTTTTA
35193 CT
1 CT
35195 ACTTAGCTTG
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
21 18 0.16
22 98 0.84
ACGTcount: A:0.14, C:0.23, G:0.06, T:0.57
Consensus pattern (22 bp):
CTTCTGATTACTCTTTCTTTTA
Found at i:35145 original size:65 final size:65
Alignment explanation
Indices: 35040--35194 Score: 220
Period size: 65 Copynumber: 2.4 Consensus size: 65
35030 TTACTCTAAT
* * * *
35040 CTTCTGATTACTTTTTCTTTTACTTCTGATTACTCTTTCTTATGCTTCTGATTACTCTTTCTTTG
1 CTTCTGATTACTCTTTCTTTTAC-TCTGATTACTATTTCTTATACTTCTGATTACTCTTTCTTTA
*
35105 G
65 A
* * *
35106 CTTTTGATTACTCTTCCTTTTACTCTGATTACTATTTCTTTTACTTCTGATTACTCTTTCTTTAA
1 CTTCTGATTACTCTTTCTTTTACTCTGATTACTATTTCTTATACTTCTGATTACTCTTTCTTTAA
*
35171 CTTCCGATTACTCTTTCTTTTACT
1 CTTCTGATTACTCTTTCTTTTACT
35195 ACTTAGCTTG
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
65 58 0.74
66 20 0.26
ACGTcount: A:0.14, C:0.23, G:0.06, T:0.57
Consensus pattern (65 bp):
CTTCTGATTACTCTTTCTTTTACTCTGATTACTATTTCTTATACTTCTGATTACTCTTTCTTTAA
Found at i:35342 original size:148 final size:143
Alignment explanation
Indices: 35185--36047 Score: 853
Period size: 148 Copynumber: 5.9 Consensus size: 143
35175 CGATTACTCT
* * * *
35185 TTCTTTTACTACTTAGCTTGATTACCCAGAATCAAACTGTTTTCTTCTTCTCTTGCTCTTTAGTT
1 TTCTTTTACT-CTTAGTTTAATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTT
* * *
35250 TAATTACCAATAATTAAACTCTTTTCTTCTTCTTTTACTTTTTAGTTTAATTACCCTGAATTAAA
65 TAATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCCTGAATTAAA
35315 CTAGCCTCTGTGTACTTC
130 CTAG-CTCT-T-T-CTTC
* ** * *
35333 TTCTTTTACTATTTAGTTTAATTACTAAGAATTAAATTGTTTTCTTCTTCTCTTGCTCTTTAGTT
1 TTCTTTTACT-CTTAGTTTAATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTT
*
35398 TAATTACCCCGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTA-CCTAGAATTAA
65 TAATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCCT-GAATTAA
*
35462 ACT--CT-TTCCTTC
129 ACTAGCTCTTTCTTC
* * * *
35474 TTCTCTTACTTTTTAGTTTAATTA-CCGGAATTAAACTAGGCTCTATTTACTTCTTCTTTTACTC
1 TTCTTTTAC-TCTTAGTTTAATTACCCAGAATTAAACT--G---T-TTT-CTTCTTCTCTTACTC
* * * *
35538 TTTAGTTTAATTACCCAGAATTGTTTAAAATTGTTTTCTTCTTCTCTTGCTCTTTAGTTTAATTA
58 TTTAGTTTAATTACCCAGAA----TT-AAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTA
* *
35603 CCCAGAATTAAA-TTG-T-TTTCTTC
118 CCCTGAATTAAACTAGCTCTTTCTTC
* * * *
35626 TTCTCTTGCTCTTTAGTTTAATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTAAT-TTTAGTT
1 TTCTTTTACTC-TTAGTTTAATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTT
*
35690 TAATTACCCGGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCC-GAAATTAA
65 TAATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCCTG-AATTAA
35754 ACT--CT-TTTCTTC
129 ACTAGCTCTTTCTTC
* * * * *
35766 TTACTTTTTAGTTTTTAGTTTAATTACCCAGAATTAAACTCTTTCCTTCTTCTCTTACTTTTTAG
1 TT-C-TTTTA-CTCTTAGTTTAATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAG
* * *
35831 TTTAATTACCCGGAATTAAACTC--TT-TTC-T-TCTTACTTTTTAGTTTGATTACCCAGAATTA
63 TTTAATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCCTGAATTA
35891 AACTAGCATCTGTTTACTTC
128 AACTAGC-TC--TTT-CTTC
* *
35911 TTCTTTTACTCTTTACTTTAATTACCCAGAATTGTTTAAAACTGTTTTCTTCTTCTCTTGCTCTT
1 TTCTTTTACTC-TTAGTTTAATTACCCAGAA----TT-AAACTGTTTTCTTCTTCTCTTACTCTT
* * * * * * * * *
35976 TAGTTTAATTATCTAGAATTAAACTGTTTCCTTCTTCTCTTGCTCTTTAGTTTAATTGCTCTGAT
60 TAGTTTAATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCCTGAA
36041 TTAAACT
125 TTAAACT
36048 TTTGATTGTA
Statistics
Matches: 607, Mismatches: 63, Indels: 85
0.80 0.08 0.11
Matches are distributed among these distances:
138 32 0.05
139 3 0.00
140 67 0.11
141 32 0.05
142 49 0.08
143 53 0.09
144 5 0.01
145 28 0.05
146 15 0.02
147 40 0.07
148 163 0.27
150 1 0.00
151 7 0.01
152 70 0.12
153 42 0.07
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.50
Consensus pattern (143 bp):
TTCTTTTACTCTTAGTTTAATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTT
AATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTAATTACCCTGAATTAAAC
TAGCTCTTTCTTC
Found at i:36047 original size:47 final size:47
Alignment explanation
Indices: 35205--36032 Score: 844
Period size: 47 Copynumber: 17.1 Consensus size: 47
35195 ACTTAGCTTG
* *
35205 ATTACCCAGAATCAAACTGTTTTCTTCTTCTCTTGCTCTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * * * *
35252 ATTACCAATAATTAAACTCTTTTCTTCTTCTTTTACTTTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * *
35299 ATTACCCTGAATTAAACTAGCCTCTGTGTACTTCTTCTTTTACTATTTAGTTTA
1 ATTACCCAGAATTAAACT-G--T-T-T-T-CTTCTTCTCTTACTCTTTAGTTTA
** * *
35353 ATTACTAAGAATTAAATTGTTTTCTTCTTCTCTTGCTCTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * *
35400 ATTACCCCGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * * *
35447 ATTACCTAGAATTAAACTCTTTCCTTCTTCTCTTACTTTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* *
35494 ATTA-CCGGAATTAAACTAGGCTCTATTTACTTCTTCTTTTACTCTTTAGTTTA
1 ATTACCCAGAATTAAACT--G---T-TTT-CTTCTTCTCTTACTCTTTAGTTTA
* *
35547 ATTACCCAGAATTGTTTAAAATTGTTTTCTTCTTCTCTTGCTCTTTAGTTTA
1 ATTACCCAGAA----TT-AAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* *
35599 ATTACCCAGAATTAAATTGTTTTCTTCTTCTCTTGCTCTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* *
35646 ATTACCCAGAATTAAACTCTTTTCTTCTTCTCTTAAT-TTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * *
35692 ATTACCCGGAATTAAACTCTTTTCTTCTTCTCTTACTTTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * * *
35739 ATTACCC-GAAATTAAACTCTTTTCTTCTTACTTTTTAGTTTTTAGTTTA
1 ATTACCCAG-AATTAAACTGTTTTCTTCTT-C-TCTTACTCTTTAGTTTA
* * *
35788 ATTACCCAGAATTAAACTCTTTCCTTCTTCTCTTACTTTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * * *
35835 ATTACCCGGAATTAAAC--TCTT-TTC-T-TCTTACTTTTTAGTTTG
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* *
35877 ATTACCCAGAATTAAACTAGCATCTGTTTACTTCTTCTTTTACTCTTTACTTTA
1 ATTACCCAGAATTAAACT-G----T-TTT-CTTCTTCTCTTACTCTTTAGTTTA
*
35931 ATTACCCAGAATTGTTTAAAACTGTTTTCTTCTTCTCTTGCTCTTTAGTTTA
1 ATTACCCAGAA----TT-AAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
* * * *
35983 ATTATCTAGAATTAAACTGTTTCCTTCTTCTCTTGCTCTTTAGTTTA
1 ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
36030 ATT
1 ATT
36033 GCTCTGATTT
Statistics
Matches: 673, Mismatches: 66, Indels: 84
0.82 0.08 0.10
Matches are distributed among these distances:
42 32 0.05
43 1 0.00
44 3 0.00
45 2 0.00
46 56 0.08
47 334 0.50
48 7 0.01
49 43 0.06
50 5 0.01
51 3 0.00
52 69 0.10
53 35 0.05
54 68 0.10
57 1 0.00
58 5 0.01
59 9 0.01
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.50
Consensus pattern (47 bp):
ATTACCCAGAATTAAACTGTTTTCTTCTTCTCTTACTCTTTAGTTTA
Done.