Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012708.1 Corchorus olitorius cultivar O-4 contig12741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20047

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1602--1629
9
3.1
9
100
0
56
0
0
25
75
0.81
5547--5584
18
2.1
18
95
5
67
57
5
10
26
1.53
7114--7654
36
15.2
36
82
5
604
19
17
18
44
1.86
7112--7654
72
7.7
72
84
2
688
19
17
18
44
1.86
7112--7654
106
5.1
108
86
2
688
19
17
18
44
1.86
7618--7671
26
2.1
26
92
0
90
12
24
22
40
1.89
7113--7654
142
3.8
144
86
3
733
19
17
18
45
1.86
7627--7680
26
2.1
26
89
0
81
14
24
22
38
1.91
8109--8800
30
23.1
30
88
2
892
19
15
19
45
1.85
14036--14078
20
2.1
20
82
4
50
44
4
2
48
1.36
14066--14153
30
2.8
30
74
19
74
44
4
2
48
1.35
14075--14139
30
2.2
30
86
5
87
44
6
1
47
1.37
14204--14266
22
2.9
21
81
9
72
52
20
14
12
1.74
14204--14255
11
4.7
11
81
6
61
55
21
11
11
1.66

Tables:   1

The End!