Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012711.1 Corchorus olitorius cultivar O-4 contig12744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58165

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--608
68
9.0
68
89
3
914
46
15
17
21
1.84
476--592
59
2.0
59
93
3
200
52
17
14
15
1.75
4199--4240
22
1.9
22
95
0
75
45
14
11
28
1.80
4784--4820
19
2.0
19
89
5
58
32
2
0
64
1.07
5080--5107
2
14.0
2
100
0
56
50
0
0
50
1.00
6610--6654
21
2.1
21
83
0
54
31
31
22
15
1.95
26646--26745
29
3.5
28
82
4
119
43
24
17
16
1.88
29535--29570
19
1.9
18
88
5
54
33
22
2
41
1.68
31115--31144
11
2.8
11
95
5
53
16
0
0
83
0.65
31876--31914
18
2.2
18
86
9
53
64
7
5
23
1.40
32883--32937
23
2.5
22
88
5
83
16
29
12
41
1.85
33321--33408
36
2.4
36
82
0
104
19
35
23
21
1.96
39230--39338
46
2.4
46
100
0
218
26
22
11
40
1.87
41957--42069
21
5.4
21
92
2
183
29
19
27
23
1.98
43893--43939
26
1.9
24
87
12
69
27
27
4
40
1.75
45488--45619
67
2.0
67
86
3
185
27
10
20
41
1.85
45498--45628
33
3.9
33
76
7
122
25
9
20
44
1.82
47474--47544
21
3.4
21
94
3
117
28
18
26
26
1.98
49435--49584
67
2.2
67
98
0
291
21
14
24
40
1.90

Tables:   1

The End!