Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012715.1 Corchorus olitorius cultivar O-4 contig12748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58839

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6363--6944
58
9.9
59
87
5
851
27
14
15
42
1.86
6362--6942
117
5.0
117
94
2
1001
27
14
15
42
1.86
7219--7325
28
3.7
30
80
14
118
19
14
22
42
1.88
7215--7470
58
4.4
57
81
4
300
19
19
21
38
1.93
7222--7470
29
8.6
28
80
5
266
19
19
21
39
1.93
7222--7470
87
2.9
87
86
5
326
19
19
21
39
1.93
11539--11584
21
2.2
21
84
0
56
8
21
43
26
1.81
15595--15642
24
2.0
25
83
4
62
8
20
0
70
1.12
17135--17194
28
2.0
30
81
15
72
35
11
36
16
1.85
19500--19879
190
2.0
190
99
0
751
46
14
11
28
1.78
21397--21436
21
1.9
21
84
0
53
17
25
25
32
1.97
27317--27390
36
2.1
36
100
0
148
51
16
16
16
1.77
32026--32060
18
1.9
18
100
0
70
45
22
14
17
1.84
38956--38981
2
13.0
2
100
0
52
50
0
0
50
1.00
44046--44089
19
2.3
19
88
7
63
15
11
0
72
1.11
44203--44249
20
2.4
20
85
3
60
51
6
17
25
1.69
44343--44416
27
2.8
26
83
4
76
40
27
17
14
1.89
45137--45608
69
6.8
69
93
0
782
27
15
30
26
1.96
46922--46990
10
6.8
11
77
15
53
15
1
13
69
1.26
46921--46967
6
8.7
6
77
17
50
17
0
14
68
1.22
46926--46975
15
3.3
15
83
11
57
18
0
12
70
1.17
46939--46990
19
2.7
20
79
8
63
13
1
11
73
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47378--47415
14
2.6
15
91
4
60
15
15
0
68
1.22
49485--49526
21
2.0
22
90
4
68
33
11
30
23
1.91
54436--54460
13
1.9
13
100
0
50
40
16
12
32
1.84
56608--56648
21
2.0
20
90
4
64
14
17
12
56
1.68

Tables:   1

The End!