Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012716.1 Corchorus olitorius cultivar O-4 contig12749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34098

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1550--1602
2
26.5
2
92
7
90
49
1
0
49
1.12
3657--3690
17
2.1
17
88
5
52
82
2
14
0
0.79
6486--7612
35
31.8
35
87
4
1431
41
18
12
26
1.87
6486--7612
106
10.6
105
85
5
1412
41
18
12
26
1.87
9538--9569
16
2.1
15
94
5
55
0
9
0
90
0.45
18241--18314
30
2.5
31
86
6
116
17
12
35
35
1.87
20853--20894
22
1.9
22
85
0
57
28
45
14
11
1.80
27755--27828
28
2.7
28
78
2
87
39
25
14
20
1.91
29137--29914
47
16.1
45
74
20
191
50
6
20
22
1.71
29091--30061
195
5.0
190
81
9
1120
49
6
20
23
1.72
29552--29683
42
3.0
42
79
12
149
48
4
22
24
1.69
29747--30073
47
6.8
46
82
8
366
47
7
20
24
1.75
30061--30218
22
7.2
22
81
1
192
57
6
24
12
1.57
30061--30218
65
2.4
66
83
2
219
57
6
24
12
1.57
30067--30218
44
3.5
44
88
1
216
57
6
23
11
1.57
30192--30292
47
2.2
47
84
8
129
53
4
21
19
1.64

Tables:   1

The End!