Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001272.1 Corchorus olitorius cultivar O-4 contig01272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1636
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35


Found at i:1031 original size:21 final size:21

Alignment explanation


    Indices: 1005--1159  Score: 217
    Period size: 21  Copynumber: 7.4  Consensus size: 21

        995 TGCTAGAAGT

                                  
       1005 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
       1026 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

               *                  
       1047 TCAATGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
       1068 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1089 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1110 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
       1131 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       1152 TCATTGGA
          1 TCATTGGA

       1160 ATTGCCTAAG


Statistics
Matches: 127,  Mismatches: 6, Indels: 2
        0.94            0.04        0.01

Matches are distributed among these distances:
  20    2  0.02
  21  125  0.98

ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.