Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012723.1 Corchorus olitorius cultivar O-4 contig12756, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71721

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
225--265
21
2.0
21
90
9
66
46
2
0
51
1.14
2141--2177
2
18.5
2
94
0
65
48
0
0
51
1.00
6674--6870
31
6.5
30
76
13
190
35
19
18
25
1.95
6674--6870
60
3.3
59
86
5
245
35
19
18
25
1.95
6910--7074
60
2.7
59
83
1
204
26
21
18
33
1.96
7210--7388
95
1.9
98
81
8
224
41
10
7
40
1.68
7455--7677
115
2.0
111
84
8
294
30
11
13
45
1.78
10420--10476
20
2.6
23
75
18
66
42
12
14
31
1.82
16020--16063
2
22.0
2
88
0
61
47
2
45
4
1.35
22999--23031
6
5.7
6
96
3
59
30
0
0
69
0.88
36478--36525
23
2.1
22
81
11
53
62
12
0
25
1.30
40402--40439
15
2.5
16
87
8
53
65
0
13
21
1.26
43469--43562
45
2.2
43
88
7
138
39
22
4
34
1.74
44443--44542
49
2.0
49
100
0
200
37
18
8
37
1.80
51970--52014
14
3.3
14
84
3
56
33
31
6
28
1.83
53298--53358
27
2.2
28
85
2
88
60
11
8
19
1.55
53297--53397
14
7.0
14
72
10
69
61
10
9
17
1.55

Tables:   1

The End!