Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012727.1 Corchorus olitorius cultivar O-4 contig12760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2096
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:1624 original size:22 final size:23

Alignment explanation


    Indices: 1589--1643  Score: 69
    Period size: 22  Copynumber: 2.4  Consensus size: 23

       1579 TTATATACAG

                                 *  
       1589 TTAACCTATA-ACTAACTAT-TAC
          1 TTAACC-ATAGACTAACTATAGAC

                                  *
       1611 TTAACCATAGACTAACTATAGAT
          1 TTAACCATAGACTAACTATAGAC

                      
       1634 TTAACCATAG
          1 TTAACCATAG

       1644 CTTGAATACA


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  21    3  0.10
  22   15  0.52
  23   11  0.38

ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33


Consensus pattern (23 bp):   
TTAACCATAGACTAACTATAGAC

Done.