genome.fa.s12729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012729.1 Corchorus olitorius cultivar O-4 contig12762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83730

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3998--4148	76	2.0	76	82	7	182	16	29	29	24	1.97
9107--9163	25	2.4	24	85	5	71	59	1	5	33	1.30
10075--10131	30	1.9	30	92	0	96	50	7	17	24	1.70
16838--16874	3	12.3	3	100	0	74	32	0	0	67	0.91
21522--21600	29	2.7	29	96	0	140	21	12	30	35	1.91
25130--25178	24	2.0	26	84	8	66	12	20	16	51	1.76
27406--27435	11	2.7	11	100	0	60	6	6	10	76	1.15
28500--28535	18	1.9	18	88	5	54	38	2	22	36	1.69
29122--29147	11	2.4	11	100	0	52	7	15	7	69	1.35
32416--32562	4	37.0	4	68	14	63	23	9	0	65	1.26
32426--32481	27	2.1	27	86	6	78	25	8	1	64	1.32
32416--32562	12	13.0	12	71	10	80	23	9	0	65	1.26
36645--36695	21	2.4	21	73	0	57	37	13	39	9	1.78
40236--40269	4	8.5	4	100	0	68	23	0	0	76	0.79
46592--46825	53	4.5	53	95	1	409	37	13	20	28	1.91
46592--46825	105	2.2	105	95	0	414	37	13	20	28	1.91
46749--46994	127	1.9	128	85	7	338	38	15	16	30	1.89
50174--50286	33	3.3	33	68	18	97	44	5	23	26	1.75
50156--50292	69	2.0	68	94	4	240	42	6	24	26	1.79
52207--52247	21	1.9	22	85	5	57	39	12	2	46	1.54
53158--53219	31	2.0	31	100	0	124	35	9	19	35	1.85
57475--57892	54	7.7	54	82	5	404	28	18	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59786--59842	27	2.1	27	83	6	71	24	8	3	63	1.39
59819--59859	18	2.2	19	91	4	66	24	14	4	56	1.58
59896--59957	12	5.4	12	77	14	51	19	6	1	72	1.15
59906--59968	4	15.5	4	77	9	65	22	6	0	71	1.08
64503--64538	18	1.9	18	88	5	54	38	2	22	36	1.69
67693--67729	19	2.1	17	90	10	56	37	21	0	40	1.54
70937--70984	22	2.2	23	78	17	57	12	27	43	16	1.84

Tables:   1

The End!