Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012730.1 Corchorus olitorius cultivar O-4 contig12763, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3623
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:1335 original size:11 final size:12

Alignment explanation


    Indices: 1309--1336  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       1299 AGATAATTTC

                        
       1309 TTTTCTTCTAGT
          1 TTTTCTTCTAGT

                        
       1321 TTTTCTTCTAGT
          1 TTTTCTTCTAGT

                
       1333 TTTT
          1 TTTT

       1337 AGGCCAAAGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.07, C:0.14, G:0.07, T:0.71


Consensus pattern (12 bp):   
TTTTCTTCTAGT

Found at i:2918 original size:22 final size:21

Alignment explanation


    Indices: 2864--2924  Score: 59
    Period size: 22  Copynumber: 2.8  Consensus size: 21

       2854 ATACACTACC

                      *      *    
       2864 TAAAATCAAAGAAAAAAGAAGA
          1 TAAAA-CAAATAAAAAAAAAGA

             *                     
       2886 TCAAACGAAATAAAAATAAAAGA
          1 TAAAAC-AAATAAAAA-AAAAGA

                      *     
       2909 TAAAACAAATTAAAAA
          1 TAAAACAAATAAAAAA

       2925 CAGAAATTAA


Statistics
Matches: 32,  Mismatches: 5, Indels: 5
        0.76            0.12        0.12

Matches are distributed among these distances:
  21    2  0.06
  22   20  0.62
  23   10  0.31

ACGTcount: A:0.72, C:0.07, G:0.08, T:0.13


Consensus pattern (21 bp):   
TAAAACAAATAAAAAAAAAGA
Done.