Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012733.1 Corchorus olitorius cultivar O-4 contig12766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2074
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:105 original size:11 final size:11

Alignment explanation


    Indices: 89--137  Score: 62
    Period size: 11  Copynumber: 4.5  Consensus size: 11

         79 CTAAGGGTAA

                       
         89 AGGAAAAAGCT
          1 AGGAAAAAGCT

                       
        100 AGGAAAAAGCT
          1 AGGAAAAAGCT

                 **    
        111 AGGAAGGAGCT
          1 AGGAAAAAGCT

                 **    
        122 AGGAAGGAGCT
          1 AGGAAAAAGCT

                 
        133 AGGAA
          1 AGGAA

        138 GGATCCTACT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   36  1.00

ACGTcount: A:0.47, C:0.08, G:0.37, T:0.08


Consensus pattern (11 bp):   
AGGAAAAAGCT

Found at i:138 original size:11 final size:11

Alignment explanation


    Indices: 96--140  Score: 72
    Period size: 11  Copynumber: 4.1  Consensus size: 11

         86 TAAAGGAAAA

                     **
         96 AGCTAGGAAAA
          1 AGCTAGGAAGG

                       
        107 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
        118 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
        129 AGCTAGGAAGG
          1 AGCTAGGAAGG

             
        140 A
          1 A

        141 TCCTACTCCT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  11   32  1.00

ACGTcount: A:0.42, C:0.09, G:0.40, T:0.09


Consensus pattern (11 bp):   
AGCTAGGAAGG
Done.