Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012735.1 Corchorus olitorius cultivar O-4 contig12768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3200
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:286 original size:154 final size:153

Alignment explanation


    Indices: 1--1097  Score: 1656
    Period size: 154  Copynumber: 7.1  Consensus size: 153

                *                    *                           *        *  
          1 CCATCGTTTATGGCCTAACTATAATTATTTTGGTGAGATTAGTCCACTATGAACTTTTTAGCCCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                                                       *   *                 
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TCGTTTTGAATCGTCTTCGATT

                          *         
        131 TGGCAAACCTCAATACTTTTCTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

             *                              * *        *                     
        155 CAATTGTTTATGGCCTAACTATAATCATTTTGTTTAGATTAGTTCACTATGAAGTTTTTAGCTCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                                    *        *                               
        220 TTTGGAACACTTGTTATTTTGGGCTTATCGGGGACCATTAGTTCTGTTTTGAATCGTCTTCGATT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC-GTTTTGAATCGTCTTCGATT

               *                    
        285 TGGAAAACCTCAATGCTTTTCTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

                *    *                        *             * *  *           
        309 CCATCGTTTTTGGCCTAACTATAATCATTTTGGTAAGATTAGTCCACTGTAAACTTTTTAGCTCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                        *                 * *                                
        374 TTTGGAACACTTATTATTTTGGGCCTATCGAGACCCATTAGTTCCGTTTTGAATCGTCTTCGATT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTT-CGTTTTGAATCGTCTTCGATT

                      *             
        439 TGGCAAACCTGAATGCTTTTCTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

                         *    *                             *                
        463 CCATTGTTTATGGACTAAATATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                                                                             
        528 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCTGTTTTGAATCGTCTTCGATT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC-GTTTTGAATCGTCTTCGATT

                                    
        593 TGGCAAACCTCAATGCTTTTCTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

                                                            *                
        617 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                   *                                   *   *             *   
        682 TTTGGAATACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATT-AATCGTCTTCAATT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TCGTTTTGAATCGTCTTCGATT

                          *         
        746 TGGCAAACCTCAATACTTTTCTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

            **                              * *        *                     
        770 GAATTGTTTATGGCCTAACTATAATCATTTTGTTTAGATTAGTTCACTATGAAGTTTTTAGCTCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                                  *                    *   *    *  *       * 
        835 TTTGGAACACTTGTTATTTTGGTCCTATCGGGGCCCATTAGTGACGTATTGAGTCTTCTTCGAAT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TCGTTTTGAATCGTCTTCGATT

                  *             *   
        900 TGGCAAGCCTCAATGCTTTTGTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

                             *              * *             *                
        924 CCATTGTTTATGGCCTACCTATAATCATTTTGTTTAGATTAGTCCACTTTGAAGTTTTTAGCTCA
          1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA

                                          *                                  
        989 TTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATT
         66 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTT-CGTTTTGAATCGTCTTCGATT

                                    
       1054 TGGCAAACCTCAATGCTTTTCTTT
        130 TGGCAAACCTCAATGCTTTTCTTT

                        *       
       1078 CCATTGTTTATGACCTAACT
          1 CCATTGTTTATGGCCTAACT

       1098 GATACGAATC


Statistics
Matches: 858,  Mismatches: 79, Indels: 12
        0.90            0.08        0.01

Matches are distributed among these distances:
 153  145  0.17
 154  711  0.83
 155    2  0.00

ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42


Consensus pattern (153 bp):   
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA
TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCGTTTTGAATCGTCTTCGATTT
GGCAAACCTCAATGCTTTTCTTT

Done.