Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012737.1 Corchorus olitorius cultivar O-4 contig12770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27485

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5692--5752
30
2.0
30
87
6
88
34
14
13
37
1.85
5854--6111
133
1.9
133
88
0
390
43
13
26
16
1.86
6648--7091
69
6.4
69
81
3
355
40
11
15
33
1.82
6757--7109
171
2.1
171
86
1
492
39
11
15
33
1.83
6654--7091
102
4.2
103
76
8
354
39
11
15
33
1.83
9165--9199
17
2.0
17
88
5
52
68
11
0
20
1.20
9328--9527
100
2.0
100
100
0
400
22
23
24
31
1.99
16249--16700
226
2.0
227
96
2
836
43
19
11
26
1.84
22351--22390
21
1.9
21
94
0
71
17
7
40
35
1.78
22351--22398
21
2.3
21
81
0
60
22
6
37
33
1.80
22442--22502
21
2.9
21
97
0
113
18
19
37
24
1.94
22439--22511
21
3.5
21
88
0
92
23
16
38
21
1.93
22505--22580
30
2.5
30
95
0
134
26
2
43
27
1.68
25326--25377
24
2.2
24
82
0
59
3
44
23
28
1.71
25343--25377
12
2.9
12
84
16
54
0
48
22
28
1.51
25874--25982
38
2.8
38
91
1
173
28
12
18
40
1.87
26869--26907
12
3.2
12
88
3
60
20
28
23
28
1.99
26998--27058
31
2.0
29
87
9
86
32
14
13
39
1.85

Tables:   1

The End!