Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012739.1 Corchorus olitorius cultivar O-4 contig12772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15855
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Found at i:2524 original size:332 final size:329
Alignment explanation
Indices: 260--2983 Score: 1992
Period size: 336 Copynumber: 8.2 Consensus size: 329
250 GCCAAAGTTA
* * * * * * * * * *
260 TTTCCTCTATTTTTAGCCACAATACTCATTAAAATTATAAAATTCAATGCCAATAAGATTGAAGG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACGCCAAAAAGATTGAAGG
* * * * * * *
325 GCTTTTCATGCTTCTAATATC-GTTTTTCCTATTATTTTTCGAATTAATTTCTGATTAAATCGAA
66 ACTTTTCACGCTTTTAATATCATTTTTTCATA-T-TTTTTCCAATTAATTTCTAATTAAATCGAA
* * * *** * * * *
389 ATATGATTCAGATGCTTGTTTTAGAAATCCTTAAATCCAATGTGGCCGCGATTTGGTTAGATGAA
129 ACAAGATTCAGATGCTCGTAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAA
* ** * * * * * * ** *
454 TATAGATATGTCAAGGAGTCTCAGCGCTAAAAATTATGCAACACTGTACC-AGGACCTCAAAATG
194 TATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTG-ACCTGGGGCCCCGGAACG
* * * * * * *
518 TGTTTTTAGCAAAAAAAAAAAAAACCGTAATTTCGACTAACGTACACAATTTCGGCTAATATTTT
258 CGTTTTTAGC--------CAAAAACAGTGA--T-G-GTTA-GTACACGATTTCGGCTAA-ATTTT
* * * *
583 GTAAAAATTGACCAGAATTATT
309 GCAAAAATTGACCCGAA-AAAT
* * *
605 TTTCCTCAATTTTTGTCTAAAATACTCAT-AAAAATATAT-ATTTCAATGCCAAAAATATTGCAA
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTT-AACGCCAAAAAGATTG-AA
* ** * *
668 -AACTTTTCACGCTTTTAATATCA-TTTTTCATATTTTTTTGAATTAATTTCAAATTAAATCAAA
64 GGACTTTTCACGCTTTTAATATCATTTTTTCATATTTTTTCCAATTAATTTCTAATTAAATCGAA
* * * * *
731 ACAAGATTCAGATGCTCGTAAAAACACATCCTAAAATGCAATGTAGTTGAGATTTGATTAGA-GA
129 ACAAGATTCAGATGCTCGT-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATG-
* * ** * * * *
795 AATATAGATATTTCAAGGACTCTCGATGGCAAAAATCATGCAAAACTGA-GTCGAGGCCCCGTAA
192 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCT-GGGGCCCCGGAA
*
859 CGCGTTTTTA-CCAAAAAAAAAACCCCGTGATGGTTAGTACACGATTTCGGCTAAACTTTTGCAA
256 CGCGTTTTTAGCC-----AAAAA--CAGTGATGGTTAGTACACGATTTCGGCTAAA-TTTTGCAA
* **
923 AAAATGACCATAAAAAT
313 AAATTGACCCGAAAAAT
* * * * * ** * *
940 TTCTCCTTAATTTTTGTCTAAAATAATCATGAAATATATATTTTTTAACACCAAAAAGATTGGAG
1 TT-TCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACGCCAAAAAGATTGAAG
* * ** *
1005 GATTTTTCACGCTTTTCATATCA-TTTTTCAT-TTTTTTGGAATTAATTTGTAATTAAATCGAAA
65 GACTTTTCACGCTTTTAATATCATTTTTTCATATTTTTTCCAATTAATTTCTAATTAAATCGAAA
* * ** ** *
1068 CAAGATACAGATGCTCGTAAAAACAAATCATTAAATGGAATGTGAATGAGATTTGATTAGATTAA
130 CAAGATTCAGATGCTCGT-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAA
* * * * * * *
1133 TATTGATATCTCAAGGATTCTTAGCGCCAAAAATCATGCAAAATTGACCTGGGGCCCTGGAATGC
194 TATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCTGGGGCCCCGGAACGC
* *
1198 GTTTTTAGCCAAAAATC-GTGATGATTTATTACACGATTTCGGCTAACATTTTGCAAAAATTGA-
259 GTTTTTAGCCAAAAA-CAGTGATG-GTTAGTACACGATTTCGGCTAA-ATTTTGCAAAAATTGAC
1261 CCGAAAAAAAT
321 CCG--AAAAAT
** * * *
1272 ATTTCCTTGATTTTTGGCTAAAATACTCATAAAAAATATATATAATTCATCGCCAAAAATATTGA
1 -TTTCCTCAATTTTTGGCTAAAATACTCAT-AAAAA-ATATATAATTTAACGCCAAAAAGATTGA
* * * *
1337 AGGATTTTTTACGCTTCTAATATC-TTTTTTCCTACTTTTTTCCGAATTAATTTCTAATTAAATC
63 AGGACTTTTCACGCTTTTAATATCATTTTTTCATA-TTTTTTCC-AATTAATTTCTAATTAAATC
* * * * * * *
1401 GAAATAAGATTTAGATGCTCGTAAAACAAATCCTTAATTCCAATGTGACTGAGATATGACTAAAT
126 GAAACAAGATTCAGATGCTCGTAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGAT
* * * * * *
1466 GAATATAGATATTTGC-ATGATTTTTGGCGCAAAAAATCATGCAAAACTGACCCGGGG-CCCAGA
191 GAATATAGATATTT-CAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCTGGGGCCCCGGA
* * * * *** * * *
1529 ATGC-TTTTTGGCAAAAAAAAAAAAAACTTGTGATGTTACACGATTTTGGCTAATATTTTGCAAA
255 ACGCGTTTTTAGC--CAAAAACAGTGA-TGGTTA-G-TACACGATTTCGGCTAA-ATTTTGCAAA
*
1593 AATTGATCC-AAAATATT
314 AATTGACCCGAAAA-A-T
* * * * * *
1610 TTTCCTCAATTTTTAGCCACAATACTTA-AAAGAAAAATATAATTCAACGCCAAAAAGATTGAAG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAA-AAATATATAATTTAACGCCAAAAAGATTGAAG
* * * * * * * *
1674 GGCTTTTCATGCTTCTAATACCGTTTTTCTTATTTTTTTTCCGAATTAATTTTTAATTAAAAT-G
65 GACTTTTCACGCTTTTAATATCATTTTT-TCATATTTTTTCC-AATTAATTTCTAATT-AAATCG
* * * * *
1738 AAAGATGATTCAGATGCTTGT------AA-----AAA--CAA--TGGCTGGGATTTGGTTAGATG
127 AAACAAGATTCAGATGCTCGTAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATG
* * * * *
1788 AATATAGATATTTCAAGGTGTCTCGCCGTCAAAAATCATTCAAAACTGAACCT--GGCCCCGGAA
192 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTG-ACCTGGGGCCCCGGAA
* **
1851 CGCGTTTTTAGCCAAAAA-ATCGTGATGATTA-TAACACGATTTCAACTAAAATTTTGCAAAAAT
256 CGCGTTTTTAGCCAAAAACA--GTGATGGTTAGT-ACACGATTTCGGCT-AAATTTTGCAAAAAT
*
1914 TGA-CCTAAAAGAT
317 TGACCCGAAAA-AT
* * * * ** *
1927 ATTTCCTCAATTTTTAGCCATAATACTCA-ATAAAATATATAATTCGACACCAAAAAGATTGAAA
1 -TTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACGCCAAAAAGATTG-AA
* * ** *
1991 GGGC-TTTCTACGCTTTTAATACCCCTTTTT-ATA-TTTTTCTGAATTAATTTCTAATTAAATCG
64 GGACTTTTC-ACGCTTTTAATATCATTTTTTCATATTTTTTC-CAATTAATTTCTAATTAAATCG
** * *
2053 AAACAAGATTCAGAT-CTCGTAAAACAAATCCTTAAATGTAATGTGGCTAAGATTTTATTAGATG
127 AAACAAGATTCAGATGCTCGTAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATG
* * * * * ** *
2117 AATTTAGATATTTCAAGGAGTGTTTGCGCCAAAAATCAAGCAAAACTGA-GTCAAGGCCCCGAAA
192 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCT-GGGGCCCCGGAA
* * * *
2181 CGCGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTTGACTAAAGTTCTGCAAAAAATGA
256 CGCGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTCGGCTAAA-TTTTGCAAAAATTGA
2246 CCCGAAAAACT
320 CCCGAAAAA-T
* * * *
2257 TTTCCTCAATTTTTGGATAACATACTCATAAAAAATATATAATTTAACGCCAAACCA-ATTGGAG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACGCCAAA-AAGATTGAAG
* *
2321 GACTTTTCACGCTTTTAATATTATTTTTTCATA-TTTTTCTCAATTAACTTCTAATTAAATCGAA
65 GACTTTTCACGCTTTTAATATCATTTTTTCATATTTTTTC-CAATTAATTTCTAATTAAATCGAA
* *
2385 ACAAGATTCAGATGCTTGTAGAAACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGA
129 ACAAGATTCAGATGCTCGTA-AAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGA
* * * * * * ***
2450 ATATGGATATCTCAAGGAGTCTTGGCGCCAAAAATCAGGCATAACTGAGCTGGGGTCCTAAAACG
193 ATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCTGGGGCCCCGGAACG
* ** * * * * * * **
2515 CATTTTTAGCTTAAAACTGTGATGATTATTACACGTTTTTGGCTAAAAATTTGTGAAAATTGACC
258 CGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTCGGCT-AAATTTTGCAAAAATTGACC
*
2580 CGAAAGAT
322 CGAAAAAT
* * *
2588 ATTTCATCAAATTTTGGCTAAAATACTCATAAAAAAATATATAATTTAACACCAAAAAGATTGAA
1 -TTTCCTCAATTTTTGGCTAAAATACTCAT-AAAAAATATATAATTTAACGCCAAAAAGATTGAA
* * * *
2653 GGGCTTTTGACG-TTTCTAATATCGTTTTCTC-TATTTTTTCCAAATTAATTTCTAATTAAATCG
64 GGACTTTTCACGCTTT-TAATATCATTTTTTCATATTTTTTCC-AATTAATTTCTAATTAAATCG
* * * *
2716 AAACAAGATTTAGATGCTCGTAAAAACAAACCCTTGAATCTAATGTGGCTGAGATTTGATTAGAT
127 AAACAAGATTCAGATGCTCGT-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGAT
* * * * *** **
2781 GAATATAGATATTTCAAGTAGTCTTGGAGTCAAAAATCATGCAAAATTGAGCC--GTTACCTAGA
191 GAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGA-CCTGGGGCCCCGGA
* * * * *
2844 ACGCGGTTTTAGCC-GAAACCGCGATGGTTTGTTAGTACACAATTTCGGCTAAAATTTTGCAAAA
255 ACGCGTTTTTAGCCAAAAACAGTGAT-G---GTTAGTACACGATTTCGGCT-AAATTTTGCAAAA
* * *
2908 AATGACACGAAAGAT
315 ATTGACCCGAAAAAT
* * * * * *
2923 TTCTTCTCAATTTTTGACTAAAATACTCAT-AAAGATATAAAATTCAACACCAAAAAGATTG
1 TT-TCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACGCCAAAAAGATTG
2984 GAGAGCTTTT
Statistics
Matches: 1918, Mismatches: 356, Indels: 222
0.77 0.14 0.09
Matches are distributed among these distances:
314 8 0.00
315 34 0.02
316 2 0.00
317 35 0.02
318 82 0.04
319 3 0.00
320 13 0.01
321 61 0.03
322 10 0.01
323 3 0.00
325 5 0.00
327 3 0.00
328 4 0.00
329 135 0.07
330 118 0.06
331 51 0.03
332 229 0.12
333 213 0.11
334 60 0.03
335 122 0.06
336 347 0.18
337 124 0.06
338 37 0.02
339 8 0.00
341 5 0.00
342 45 0.02
343 87 0.05
344 48 0.03
345 26 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (329 bp):
TTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACGCCAAAAAGATTGAAGG
ACTTTTCACGCTTTTAATATCATTTTTTCATATTTTTTCCAATTAATTTCTAATTAAATCGAAAC
AAGATTCAGATGCTCGTAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATA
TAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCTGGGGCCCCGGAACGCGT
TTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTCGGCTAAATTTTGCAAAAATTGACCCGAA
AAAT
Found at i:3488 original size:15 final size:16
Alignment explanation
Indices: 3470--3499 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3460 ATAAATAATA
3470 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
3485 ATATTATAATCTAAA
1 ATATTATAATCTAAA
3500 AATAATTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:4032 original size:20 final size:21
Alignment explanation
Indices: 4009--4047 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
3999 GTAAAAGATT
*
4009 CATAATTAAATAAA-TAAAAA
1 CATAAATAAATAAACTAAAAA
*
4029 CATAAATAATTAAACTAAA
1 CATAAATAAATAAACTAAA
4048 TAATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.26
Consensus pattern (21 bp):
CATAAATAAATAAACTAAAAA
Found at i:4056 original size:14 final size:14
Alignment explanation
Indices: 4010--4052 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 14
4000 TAAAAGATTC
4010 ATAATT-AA-ATAA
1 ATAATTAAACATAA
4022 ATAA--AAACATAA
1 ATAATTAAACATAA
4034 ATAATTAAAC-TAA
1 ATAATTAAACATAA
4047 ATAATT
1 ATAATT
4053 TAAAAATGCG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.07
12 12 0.44
13 9 0.33
14 4 0.15
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATTAAACATAA
Found at i:5135 original size:15 final size:15
Alignment explanation
Indices: 5115--5144 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
5105 CATCTTTACC
5115 AATAAGATAGATGAA
1 AATAAGATAGATGAA
5130 AATAAGATAGATGAA
1 AATAAGATAGATGAA
5145 TTTGTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (15 bp):
AATAAGATAGATGAA
Found at i:5447 original size:90 final size:90
Alignment explanation
Indices: 5294--5468 Score: 273
Period size: 90 Copynumber: 1.9 Consensus size: 90
5284 TATTCTATAG
* *
5294 TCATATTGAGTCACTGATTTAAAACCTAACCAAATCAATTTCAAAACCCGAAAAACTCTCTCGAG
1 TCATATTGAGTCACTAATTTAAAACCTAACCAAATCAATTTCAAAACCCAAAAAACTCTCTCGAG
5359 GCTTATTAATTTTCTCCATTTTTAT
66 GCTTATTAATTTTCTCCATTTTTAT
* * *
5384 TCATATTGA-TCCACTAATTTGAAACCTAATCAAATCGATTTC-AAACCCAAAAAAACTCTCTCG
1 TCATATTGAGT-CACTAATTTAAAACCTAACCAAATCAATTTCAAAACCC-AAAAAACTCTCTCG
5447 AGGCTTATTAATTTTCTCCATT
64 AGGCTTATTAATTTTCTCCATT
5469 CTAGTTCTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
89 7 0.09
90 71 0.91
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (90 bp):
TCATATTGAGTCACTAATTTAAAACCTAACCAAATCAATTTCAAAACCCAAAAAACTCTCTCGAG
GCTTATTAATTTTCTCCATTTTTAT
Found at i:15125 original size:333 final size:333
Alignment explanation
Indices: 14664--15852 Score: 1679
Period size: 333 Copynumber: 3.6 Consensus size: 333
14654 TTAATACGAC
* * * * * * *
14664 AAAAAATAGGGAAAACGATATTAGAAGCGTTAAAGGTCCTCCAATTTTTTTGGCGTTAAATTATA
1 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTCAATTATA
* * **
14729 TATTTTTTATGAGTATTGTGGCAAAAAATAGATAAAAAAAATTTCGGGTCAATTTTTGCAAAATT
66 TATTTTTTATGAGTAATGTGGCAAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTGCAAAATT
* * * *
14794 TTAGCCGAAATCATGTACAATCCATCACGGTTTATGACTAAAAACGCGTTCCGGGGACCCGACTC
131 TTAGCCGAAATCGTGTACAATCCATCACGATTTATGACTAAAAACGCGTTCCGGGGCCCCGGCTC
* *
14859 AATTTTGCATGATTTTCGGCGTCAAGATTTATTAAAATATCTATATTCATCTAACCAAATCTCAG
196 AATTTTGCATGATTTTTGGCGTCAAGATTCATTAAAATATCTATATTCATCTAACCAAATCTCAG
14924 CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATT
261 CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATT
14989 AATTCATA
326 AATTCATA
*
14997 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGTGTTCAATTATA
1 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTCAATTATA
* ** *
15062 TA-TTTTTATTGAGTAATGTGGCTAAAAATTGAGGAAAAATCTTTCGGGTCATTTTTTGCAAAAT
66 TATTTTTTA-TGAGTAATGTGGCAAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTGCAAAAT
* * * *
15126 TTTAGCCGAAATCGTGTACTATCCATCACGATTTTTGGCTAAAAACGCGTTCCGTGGCCCCGGCT
130 TTTAGCCGAAATCGTGTACAATCCATCACGATTTATGACTAAAAACGCGTTCCGGGGCCCCGGCT
* * * * * *
15191 CAGTTTAGCATGATTTTTTGCGGCAAGAATCCTTAAAATATCTATATTCATCTAACCAAATCTCA
195 CAATTTTGCATGATTTTTGGCGTCAAGATTCATTAAAATATCTATATTCATCTAACCAAATCTCA
* * * * * *
15256 GCTACATTGGATTTAAGGATTTGTTTTTATGAGTAT-TAGAATCTTGTTTCGATTTTATTAGAAA
260 GCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT-GAATCATGTTTCGATTTAATAAGAAA
*
15320 TTAATTC-GA
324 TTAATTCATA
* * *
15329 AAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGTTGAATTATA
1 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTCAATTATA
* * * *
15394 TATTTTTTATGAGTATTGTGGCAAAAAATTGATGAAAAAAATTTTGGGTTAATTTTTGCAAAATT
66 TATTTTTTATGAGTAATGTGGCAAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTGCAAAATT
* * *
15459 TTAGCCGAAATCGTGTACAATCCATCACGGTTTATGACTTTAAAACGCATTCCGGGGCCCCGGCT
131 TTAGCCGAAATCGTGTACAATCCATCACGATTTATGAC-TAAAAACGCGTTCCGGGGCCCCGGCT
* * * *
15524 CAATTTTGCATGATTTTTGGCGTGAATATTCATTGAAATATTTATATTCATCTAACCAAATCTCA
195 CAATTTTGCATGATTTTTGGCGTCAAGATTCATTAAAATATCTATATTCATCTAACCAAATCTCA
*
15589 GCCACATTGGATTTAAGGATTTG-TTTTACGAGCATCTGAATCATGTTTCGGTTTAATAAGAAAT
260 GCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAAT
15653 TAATTCAT-
325 TAATTCATA
* * * *
15661 AAAAAATAGGAAAAACGATATTAGAAGCATGAAAAGCCATTCAATCTTTTTGGTGTTCAAATATA
1 AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTCAATTATA
* * **
15726 TA-ATTTTATTGAGTAATGTGGCTAAAAATTGAGGAAAAATGTTTCGGGTCAATTTTTGCAAAAT
66 TATTTTTTA-TGAGTAATGTGGCAAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTGCAAAAT
* * * * * * *
15790 TGTACCCGAAATTGTGTACTATCCATCACGATTTTTGGCTAAAAATGCGTTCCGGGGCCCCGG
130 TTTAGCCGAAATCGTGTACAATCCATCACGATTTATGACTAAAAACGCGTTCCGGGGCCCCGG
15853 ATC
Statistics
Matches: 748, Mismatches: 101, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
331 26 0.03
332 332 0.44
333 390 0.52
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (333 bp):
AAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTCAATTATA
TATTTTTTATGAGTAATGTGGCAAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTGCAAAATT
TTAGCCGAAATCGTGTACAATCCATCACGATTTATGACTAAAAACGCGTTCCGGGGCCCCGGCTC
AATTTTGCATGATTTTTGGCGTCAAGATTCATTAAAATATCTATATTCATCTAACCAAATCTCAG
CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATT
AATTCATA
Done.