Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001274.1 Corchorus olitorius cultivar O-4 contig01274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1255
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41


Found at i:92 original size:24 final size:25

Alignment explanation


    Indices: 59--116  Score: 82
    Period size: 25  Copynumber: 2.4  Consensus size: 25

         49 GTCAGCCTTG

                 *               *   
         59 AATTTTTTTAATGT-TTAATTCTTA
          1 AATTTATTTAATGTCTTAATTATTA

                                    *
         83 AATTTATTTAATGTCTTAATTATTC
          1 AATTTATTTAATGTCTTAATTATTA

                     
        108 AATTTATTT
          1 AATTTATTT

        117 TACAATCCAC


Statistics
Matches: 30,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  24   13  0.43
  25   17  0.57

ACGTcount: A:0.31, C:0.05, G:0.03, T:0.60


Consensus pattern (25 bp):   
AATTTATTTAATGTCTTAATTATTA

Found at i:710 original size:6 final size:6

Alignment explanation


    Indices: 695--748  Score: 90
    Period size: 6  Copynumber: 8.8  Consensus size: 6

        685 TAAAGACTAG

                 *                                                  
        695 TATATA TATATC TATATC TATATC TATATC TATATC TATATC TATATAC
          1 TATATC TATATC TATATC TATATC TATATC TATATC TATATC TATAT-C

                 
        744 TATAT
          1 TATAT

        749 AAGTCTAAAC


Statistics
Matches: 46,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
   6   40  0.87
   7    6  0.13

ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50


Consensus pattern (6 bp):   
TATATC

Done.