genome.fa.s12743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012743.1 Corchorus olitorius cultivar O-4 contig12776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104300

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3839--3921	35	2.4	34	93	2	139	42	8	22	26	1.82
9416--9471	16	3.5	16	71	9	60	46	0	28	25	1.53
9411--9473	32	2.0	32	96	0	117	46	0	28	25	1.53
11921--11966	19	2.4	19	96	3	83	52	0	6	41	1.27
13546--13679	25	5.4	25	97	0	241	35	14	25	24	1.94
22463--22489	2	13.5	2	100	0	54	48	0	0	51	1.00
23347--23547	98	2.1	98	99	0	393	22	28	5	42	1.77
30368--30849	40	12.1	40	82	7	347	37	9	19	32	1.85
30376--30850	118	4.0	118	84	7	586	37	9	20	32	1.84
30394--30863	158	3.0	158	95	1	843	38	9	19	32	1.84
31137--31989	145	6.0	144	90	2	1287	34	16	19	29	1.94
32911--32972	4	16.5	4	93	6	96	0	22	0	77	0.77
32914--32980	12	5.2	12	83	13	62	0	19	0	80	0.71
33278--33321	19	2.3	19	84	0	61	20	18	0	61	1.35
33314--33373	8	7.5	8	81	3	59	0	8	8	83	0.82
33314--33373	24	2.5	24	84	15	72	0	8	8	83	0.82
37925--38013	43	2.1	42	97	2	169	20	19	31	29	1.97
53075--53104	15	1.9	16	93	6	53	16	10	6	66	1.41
57519--57555	18	2.1	18	95	5	67	37	10	21	29	1.88
59614--59652	17	2.2	18	95	4	71	28	28	7	35	1.85
64025--64289	48	5.5	47	69	14	182	14	31	23	30	1.94
64078--64237	25	6.6	25	68	11	73	13	33	23	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64280--64348	25	2.8	25	86	0	93	15	28	27	27	1.96
64004--64325	98	3.3	97	90	1	477	14	31	23	30	1.94
64367--64521	21	7.4	21	82	3	197	13	29	22	34	1.92
64367--64548	42	4.4	42	88	2	226	13	28	21	36	1.91
64466--64540	21	3.6	21	76	7	80	17	18	24	40	1.91
64788--65551	123	6.3	122	81	6	813	13	26	30	28	1.94
64868--65551	235	2.8	240	83	4	821	13	27	30	28	1.94
66394--66439	21	2.2	21	84	0	56	32	30	21	15	1.94
69247--69277	2	15.5	2	93	0	53	48	0	3	48	1.17
70143--70171	14	2.1	14	100	0	58	17	0	20	62	1.33
76359--76428	36	1.9	36	91	0	113	21	10	8	60	1.55
76699--76764	31	2.1	31	100	0	132	51	9	16	22	1.72
77468--77514	25	1.9	24	86	4	67	57	6	6	29	1.49
78244--78269	2	13.0	2	100	0	52	50	0	0	50	1.00
79274--79341	29	2.3	29	85	7	84	41	29	13	16	1.86
79979--80007	15	2.0	15	93	6	51	0	17	6	75	1.01
83652--83691	21	1.9	21	89	0	62	35	20	17	27	1.95
85598--85637	21	1.9	21	89	0	62	35	20	17	27	1.95
87160--87199	21	1.9	21	89	0	62	35	20	17	27	1.95
91192--91232	22	1.9	21	90	5	64	87	4	2	4	0.72
92169--92305	31	4.4	31	84	0	166	30	24	24	20	1.98
94119--94253	67	2.0	67	100	0	270	35	20	11	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94981--95043	17	3.5	17	79	14	65	44	1	0	53	1.10
94971--95044	25	3.1	24	74	23	75	43	2	0	54	1.14
95417--95481	19	3.6	19	82	14	75	56	20	0	23	1.42
102897--102933	1	37.0	1	100	0	74	0	0	0	100	0.00

Tables:   1

The End!