Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012744.1 Corchorus olitorius cultivar O-4 contig12777, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12728
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:10120 original size:24 final size:25

Alignment explanation


    Indices: 10091--10142  Score: 79
    Period size: 25  Copynumber: 2.1  Consensus size: 25

      10081 CACTTTCTTT

                                     
      10091 TATTGTGC-TCCCTTTCTTCTTTGA
          1 TATTGTGCTTCCCTTTCTTCTTTGA

                        *   *        
      10115 TATTGTGCTTCCTTTTTTTCTTTGA
          1 TATTGTGCTTCCCTTTCTTCTTTGA

               
      10140 TAT
          1 TAT

      10143 ATGGCATGGC


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24    8  0.32
  25   17  0.68

ACGTcount: A:0.10, C:0.19, G:0.12, T:0.60


Consensus pattern (25 bp):   
TATTGTGCTTCCCTTTCTTCTTTGA

Found at i:10141 original size:25 final size:24

Alignment explanation


    Indices: 10084--10142  Score: 77
    Period size: 25  Copynumber: 2.5  Consensus size: 24

      10074 ATGTTACCAC

                                    
      10084 TTTCTTT--TATTGTGCTCCCTTT
          1 TTTCTTTGATATTGTGCTCCCTTT

            *                    *   
      10106 CTTCTTTGATATTGTGCTTCCTTTT
          1 TTTCTTTGATATTGTGC-TCCCTTT

                        
      10131 TTTCTTTGATAT
          1 TTTCTTTGATAT

      10143 ATGGCATGGC


Statistics
Matches: 31,  Mismatches: 3, Indels: 3
        0.84            0.08        0.08

Matches are distributed among these distances:
  22    6  0.19
  24    8  0.26
  25   17  0.55

ACGTcount: A:0.08, C:0.19, G:0.10, T:0.63


Consensus pattern (24 bp):   
TTTCTTTGATATTGTGCTCCCTTT
Done.