Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012748.1 Corchorus olitorius cultivar O-4 contig12781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22509

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1031
154
6.7
154
88
2
1471
40
19
18
22
1.92
1802--1882
30
2.6
32
74
9
85
19
16
23
40
1.90
8379--8425
22
2.1
22
85
14
62
72
0
2
25
0.96
10059--10096
20
2.0
20
84
5
51
63
10
0
26
1.27
10759--10834
2
40.0
2
70
19
56
46
0
3
50
1.20
16324--16373
21
2.4
21
86
0
64
36
8
10
46
1.67
16341--16380
21
1.9
21
84
0
53
32
12
12
42
1.80
18553--18667
2
56.5
2
93
3
194
0
2
47
49
1.15
19159--19203
21
2.1
21
95
0
81
40
22
8
28
1.84
21227--21262
18
2.0
18
94
0
63
25
33
13
27
1.94
22198--22294
21
4.6
21
92
2
142
27
25
15
30
1.96

Tables:   1

The End!