genome.fa.s12750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012750.1 Corchorus olitorius cultivar O-4 contig12783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35945

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2439--2491	18	2.9	18	82	0	52	26	39	5	28	1.79
2451--2526	24	3.2	24	76	0	80	26	42	6	25	1.79
2468--2535	30	2.3	30	86	0	91	26	41	8	23	1.83
4667--4692	11	2.4	11	100	0	52	69	7	15	7	1.35
15059--15084	9	2.9	9	100	0	52	34	23	7	34	1.83
17440--17693	39	6.6	40	76	11	244	23	18	18	39	1.92
17336--17518	101	1.8	101	85	2	260	26	16	18	38	1.92
17448--17694	77	3.2	77	94	0	440	23	19	18	38	1.93
19704--19741	18	2.0	20	85	10	53	71	10	18	0	1.14
21467--21502	19	1.9	18	88	5	54	27	22	8	41	1.82
24412--24461	23	2.2	23	82	3	57	18	22	14	46	1.84
24466--24507	21	2.0	21	90	0	66	16	26	11	45	1.82
27089--27131	22	1.9	23	95	4	79	37	13	23	25	1.92
27515--28071	22	25.4	22	70	12	220	36	15	10	38	1.81
27660--27779	45	2.7	45	79	6	120	40	17	10	31	1.84
27844--27895	27	1.9	27	92	0	86	46	17	3	32	1.66
27870--27988	60	2.0	61	86	1	168	37	15	7	39	1.75
27619--28572	44	22.0	44	66	17	206	36	16	9	37	1.82
28263--28409	68	2.2	63	81	12	154	33	13	10	42	1.78
27871--28615	22	34.7	20	65	21	138	35	16	9	38	1.81
28780--28818	20	2.0	20	85	10	53	64	2	5	28	1.28
29069--29106	13	2.8	13	82	17	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29526--29579	27	2.0	27	92	0	90	20	16	24	38	1.92
32463--32517	18	3.1	18	72	17	60	16	7	21	54	1.66

Tables:   1

The End!