Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012751.1 Corchorus olitorius cultivar O-4 contig12784, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20547
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:19043 original size:17 final size:17

Alignment explanation


    Indices: 19021--19053  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

      19011 TTATTTACTG

                             
      19021 AAATAATAATAATTATA
          1 AAATAATAATAATTATA

                      *     
      19038 AAATAATAATTATTAT
          1 AAATAATAATAATTAT

      19054 TCATTAAATA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39


Consensus pattern (17 bp):   
AAATAATAATAATTATA
Done.