Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012752.1 Corchorus olitorius cultivar O-4 contig12785, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48175

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83--112
2
15.0
2
100
0
60
50
0
0
50
1.00
1115--1156
20
2.2
20
83
12
52
40
19
11
28
1.87
1914--1939
13
2.0
13
100
0
52
15
0
7
76
0.99
2315--2348
14
2.3
15
95
5
61
11
17
0
70
1.16
2357--2406
6
8.3
6
78
13
50
12
0
4
84
0.76
2357--2406
16
2.8
18
76
17
59
12
0
4
84
0.76
2372--2406
10
3.6
10
84
7
54
11
0
5
82
0.82
2366--2396
16
1.9
16
100
0
62
12
0
3
83
0.75
2784--2934
76
2.0
75
83
11
193
29
22
11
36
1.89
7189--7213
13
1.9
13
100
0
50
40
16
12
32
1.84
8388--8423
2
18.0
2
94
0
63
52
0
0
47
1.00
11496--11568
26
2.7
26
83
10
94
41
28
15
15
1.87
11496--11575
28
2.9
28
85
3
110
40
27
16
16
1.89
12061--12828
36
21.4
35
86
3
794
28
16
10
45
1.80
17612--17707
28
3.0
33
80
15
105
34
10
17
37
1.84
18125--18181
21
2.8
20
77
17
71
73
0
12
14
1.09
20054--20287
106
2.2
106
99
0
459
41
9
11
38
1.74
20271--20310
21
1.9
21
89
0
62
47
10
20
22
1.79
24787--24846
22
2.7
22
94
0
102
3
26
45
25
1.69
25822--25857
8
4.9
8
80
19
51
66
8
0
25
1.19
25822--25868
21
2.2
21
81
7
60
68
8
2
21
1.27
26873--26914
21
2.0
21
100
0
84
19
19
23
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35638--35704
27
2.5
28
81
16
70
38
11
1
47
1.50
37587--37622
18
1.9
18
88
5
54
38
2
22
36
1.69
39337--39380
22
2.0
22
86
8
63
11
2
15
70
1.26
39339--39372
15
2.3
15
89
0
50
8
2
14
73
1.19
46463--46499
2
19.0
2
88
5
58
48
2
0
48
1.15

Tables:   1

The End!