Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012754.1 Corchorus olitorius cultivar O-4 contig12787, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54299

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7152--7223
33
2.2
33
92
0
117
27
22
29
20
1.99
8984--9027
19
2.4
18
84
3
52
52
2
0
45
1.13
11405--11436
15
2.1
15
94
0
55
40
12
9
37
1.75
13436--13478
22
2.0
22
90
0
68
46
4
37
11
1.61
15129--15201
27
2.7
27
86
0
101
38
26
16
19
1.92
15742--15771
10
3.0
10
100
0
60
20
50
0
30
1.49
21932--23017
54
20.2
54
79
7
998
31
21
18
27
1.97
22970--23195
54
4.2
53
79
4
231
36
21
15
25
1.93
22969--23195
107
2.1
108
82
2
269
36
22
15
25
1.94
25028--25055
11
2.5
11
100
0
56
0
14
0
85
0.59
25024--25065
11
3.7
12
87
6
52
0
16
4
78
0.91
27728--27767
15
2.6
16
92
4
64
12
10
12
65
1.49
28031--28091
30
2.0
31
87
9
90
34
9
9
45
1.70
28031--28105
30
2.4
30
82
13
89
29
9
12
49
1.71
31050--31094
21
2.1
21
87
0
63
4
46
20
28
1.69
34583--34615
15
2.1
16
88
5
50
15
9
12
63
1.51
37591--37623
15
2.1
16
94
5
59
54
12
0
33
1.37
37808--37844
19
2.0
19
89
5
58
32
2
0
64
1.07
37963--37989
13
2.1
13
100
0
54
40
0
14
44
1.46
40005--40320
39
8.7
37
79
12
268
18
15
17
48
1.81
40045--40329
71
4.0
73
80
13
274
18
15
16
49
1.79
40114--40656
30
17.2
30
82
10
500
20
15
17
47
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40050--40656
90
6.2
100
78
15
391
20
15
16
47
1.82
40015--40389
173
2.1
176
83
9
453
18
15
17
48
1.81
40743--40831
39
2.3
39
77
11
101
19
12
17
50
1.77
41166--41260
26
3.6
26
87
4
120
15
15
29
38
1.89
41614--41663
18
2.7
18
78
3
55
14
20
30
36
1.91
50480--51031
189
2.8
197
86
6
773
34
17
12
34
1.88

Tables:   1

The End!