Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012757.1 Corchorus olitorius cultivar O-4 contig12790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40329

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2696--2987
30
10.1
30
84
8
383
48
19
12
20
1.80
2816--2945
24
4.9
24
72
20
107
47
21
12
18
1.81
2726--2987
114
2.3
108
85
7
326
48
19
11
20
1.80
2696--2987
84
3.4
84
92
2
449
48
19
12
20
1.80
2954--3159
77
2.7
76
91
3
324
49
16
14
19
1.80
2956--3159
39
5.3
38
82
3
239
49
16
14
19
1.80
2992--3194
77
2.6
77
89
1
237
49
15
15
19
1.80
3292--3918
168
3.7
168
87
2
882
34
16
19
28
1.94
3292--3918
338
1.9
337
90
1
995
34
16
19
28
1.94
3954--4142
69
2.7
69
95
0
333
28
16
29
25
1.97
5405--5464
9
6.7
9
79
5
68
10
15
0
75
1.05
5765--5840
13
6.5
13
72
27
64
10
0
13
76
1.02
5764--5838
35
2.2
34
86
11
100
10
0
13
76
1.03
5772--5839
23
3.0
23
76
14
63
10
0
11
77
0.98
5772--5839
35
1.9
36
91
8
113
10
0
11
77
0.98
6219--6278
8
7.5
8
79
7
68
11
13
0
75
1.06
9807--9958
32
4.6
32
74
11
126
25
20
21
32
1.97
9824--9896
38
1.9
38
86
5
103
23
19
27
30
1.98
9796--9931
70
1.9
70
84
0
182
25
19
25
30
1.98
14136--14403
146
1.8
146
90
1
430
32
16
19
30
1.94
14394--14482
31
2.8
31
91
1
124
20
26
28
24
1.99
14416--14482
31
2.2
31
100
0
134
22
28
28
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18236--18271
19
1.9
18
88
5
54
33
22
2
41
1.68
25478--25731
111
2.3
111
94
2
458
27
22
11
38
1.88
25689--25775
43
2.2
40
89
10
133
22
20
9
47
1.79
25761--25789
14
2.1
14
100
0
58
13
13
20
51
1.75
25961--25997
18
2.1
18
100
0
74
51
21
5
21
1.68
30508--30536
9
3.2
9
100
0
58
44
0
0
55
0.99
31923--31953
11
2.8
11
90
0
53
32
9
22
35
1.87
32195--32318
47
2.7
47
92
3
198
39
10
13
36
1.79
32435--32464
15
1.9
16
93
6
53
20
10
6
63
1.47
32501--32693
41
4.8
42
74
13
183
33
18
15
33
1.92
37117--37147
11
2.8
11
90
0
53
32
9
22
35
1.87
39162--39279
16
7.7
15
72
19
75
37
4
12
45
1.62
39181--39289
4
27.2
4
75
14
55
34
3
14
46
1.62
39165--39283
24
5.3
24
73
24
107
36
4
13
46
1.63
39162--39275
40
2.8
40
98
0
219
37
4
12
45
1.62
39335--39367
16
2.1
16
100
0
66
45
12
6
36
1.66

Tables:   1

The End!