Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012760.1 Corchorus olitorius cultivar O-4 contig12793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44884

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1866--1922
30
1.9
29
89
10
89
59
5
14
21
1.54
7311--7346
19
1.9
18
88
5
54
27
22
8
41
1.82
7775--7805
14
2.1
15
94
5
55
12
16
6
64
1.47
8744--8985
75
3.2
75
90
0
367
32
18
25
24
1.97
30015--30095
42
1.9
42
92
0
135
45
18
7
28
1.76
30028--30094
21
3.2
21
66
16
57
49
17
5
26
1.70
30161--30275
57
2.0
57
94
1
205
40
1
23
33
1.65
30462--30486
2
12.5
2
100
0
50
48
0
0
52
1.00
31843--31927
43
2.0
43
97
0
161
47
10
11
30
1.74
32903--32992
46
2.0
46
95
0
162
17
13
18
50
1.78
39629--39659
16
1.9
16
93
0
53
35
9
0
54
1.33
39994--40893
198
4.5
198
88
2
1262
34
17
13
34
1.89
39994--40897
398
2.3
399
87
3
1294
34
16
13
34
1.89
42566--42606
21
2.0
21
85
9
57
34
9
26
29
1.88

Tables:   1

The End!